View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21004_low_11 (Length: 364)
Name: NF21004_low_11
Description: NF21004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21004_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 34286521 - 34286194
Alignment:
| Q |
16 |
ataaagtaaagacacgtacctgcacaatcatagaaaattccaatcaaaaacaaagaaaaccatgcaatcccatcaatcttgttcatactagtgatcaagc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34286521 |
ataaagtaaagacacgtacctgcacaatcatagaaaattccaatcaaaaacaaagaaaaccatgcaatcccatcaatcttgttcatactagtgatcaagc |
34286422 |
T |
|
| Q |
116 |
tcaactacccaagtaactgttataactaataggacaaaagaaggtacaatctgagtagaaggccacttaacttaactaactgcattatatttatgatcaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34286421 |
tcaactacccaagtaactgttataact----ggacaaaagaaggtacaatctgagtagaaggccacttaacttaactaactgcattatatttatgatcaa |
34286326 |
T |
|
| Q |
216 |
ttacaattttgatgtcaccatcaccaattatatttttactacagaatcagccaatcagccaatatatttcgcatttgaatgttgctatttcctatcagaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34286325 |
ttacaattttgatgtcaccatcaccaattatatttttactacagaatcagccaatcagccaatatatttcgcatttgaatgttgctatttcctatcagaa |
34286226 |
T |
|
| Q |
316 |
gaggtaaattaagatgaataacaatataaaac |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
34286225 |
gaggtaaattaagatgaataacaatataaaac |
34286194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University