View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21004_low_14 (Length: 330)
Name: NF21004_low_14
Description: NF21004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21004_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 39032354 - 39032048
Alignment:
| Q |
19 |
tatgtatcaattaacatgtaactgaatatttttcttatctctaactaattttattaaatatcaggtgcatgtgttagctgtcccacaaaatggatctctc |
118 |
Q |
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| T |
39032354 |
tatgtatcaattaacatgtaactgaatatttttcttatctctaactaattttattaaatatcaggtgcatgtgttagctgtcccacaaaatggatctctc |
39032255 |
T |
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| Q |
119 |
atctttaatccaagtcataaaggaaagggattgacactcttgattgtaatgatggtgatgatatttattgctatcttgagttttctattcttgaatcttg |
218 |
Q |
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| T |
39032254 |
atctttaatccaagtcataaaggaaagggattgacactcttgattgtaatgatggtgatgatatttattgctatcttgagttttctattcttgaatcttg |
39032155 |
T |
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| Q |
219 |
gagtgacaaagagagaaatgcatttgtgtgcatcactaatgcaacaaaaggaagccacagaacaagctgagagaaagaataccaataagagccttgcctt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39032154 |
gagtgacaaagagagaaatgcatttgtgtgcatcactcatgcaacaaaaggaagccacagaacaagctgagagaaagaataccaataagagccttgcttt |
39032055 |
T |
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| Q |
319 |
tgctact |
325 |
Q |
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||||||| |
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| T |
39032054 |
tgctact |
39032048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 323
Target Start/End: Complemental strand, 40897872 - 40897778
Alignment:
| Q |
229 |
gagagaaatgcatttgtgtgcatcactaatgcaacaaaaggaagccacagaacaagctgagagaaagaataccaataagagccttgcctttgcta |
323 |
Q |
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| T |
40897872 |
gagagaaatgcatttgtgtgcctcacttatcaaacaaaaagaggccactcaccaagctgagagaaaaaatatgaacaagagcctcgccgttgcta |
40897778 |
T |
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