View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21004_low_16 (Length: 298)

Name: NF21004_low_16
Description: NF21004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21004_low_16
NF21004_low_16
[»] chr5 (2 HSPs)
chr5 (18-279)||(28607785-28608046)
chr5 (150-275)||(7589668-7589792)
[»] scaffold0002 (1 HSPs)
scaffold0002 (22-267)||(438861-439106)
[»] chr3 (3 HSPs)
chr3 (146-279)||(13659160-13659293)
chr3 (152-279)||(13651674-13651801)
chr3 (22-90)||(13659349-13659417)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 28608046 - 28607785
Alignment:
Q  18 tggaaaacaaagtgcttagaatctttagaacacacatcaagagtataatgataagtgtaaagggccaacttggttgatagaaaacgggcacgaacatgag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28608046 tggaaaacaaagtgcttagaatctttagaacacacatcaagagtataatgataagtgtaaagggccaacttggttgatagaaaacgggcacgaacatgag 28607947  T
Q  118 tttcaatccacttccaataaagtaaattggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaa 217  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28607946 tttcaatccactgccaataaagtaaattggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccgtgaggtaaa 28607847  T
Q  218 atcaacccgtatacaaatgcaccaacaacgtcatgtgtaccaagaatatctgttatgtatga 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28607846 atcaacccgtatacaaatgcaccaacaacgtcatgtgtaccaagaatatcagttatgtatga 28607785  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 275
Target Start/End: Original strand, 7589668 - 7589792
Alignment:
Q  150 ctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaacgtc 249  Q
    |||||||| |||||||||||||||| ||| |||| ||||||||||||||||| ||||  || ||||||||||||| ||| |   | |||||||||| ||     
T  7589668 ctagaaacacaccaccaaaatcattggtcgttgacgtgaccatgtcagcaaa-ttactgtgtggtaaaatcaaccggtacattgaagcaccaacaatgtt 7589766  T
Q  250 atgtgtaccaagaatatctgttatgt 275  Q
    | |||| || ||||||| ||||||||    
T  7589767 aggtgtgccgagaatatatgttatgt 7589792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 438861 - 439106
Alignment:
Q  22 aaacaaagtgcttagaatctttagaacacacatcaagagtataatgataagtgtaaagggccaacttggttgatagaaaacgggcacgaacatgagtttc 121  Q
    |||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| |||  ||| |||| ||| |||||| ||     | |||||||||     
T  438861 aaacaaagtgcttaaaatctttggaacacacaacaagagtataatgataagtgtataggcacaatttggctgaaagaaaatggttttcaccatgagtttt 438960  T
Q  122 aatccacttccaataaagtaaattggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatca 221  Q
     ||||| | |||  |||||| || ||||| ||||| |||  |||||||||||||||||||||   ||||||||||||||||||||| |||||||||||||    
T  438961 gatccattgccacaaaagtagatcggtgcaagaaagccaataccaaaatcattagtcattgacacgaccatgtcagcaaatttaccgtgaggtaaaatca 439060  T
Q  222 acccgtatacaaatgcaccaacaacgtcatgtgtaccaagaatatc 267  Q
    ||||||||| ||| || |||||||| |||||||| |||||| ||||    
T  439061 acccgtataaaaaagccccaacaacatcatgtgtgccaagagtatc 439106  T

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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 13659293 - 13659160
Alignment:
Q  146 ggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaa 245  Q
    |||||||||||||| || | |||||||| ||||| ||  ||||| || |||||||||||||| |||||||||||||||||||| ||||| || |||||||    
T  13659293 ggtgctagaaacccgccgcaaaaatcatcagtcagtgtagtgacgatatcagcaaatttaccgtgaggtaaaatcaacccgtacacaaaagccccaacaa 13659194  T
Q  246 cgtcatgtgtaccaagaatatctgttatgtatga 279  Q
     ||| ||||| |||||||||||||||||| ||||    
T  13659193 tgtcttgtgttccaagaatatctgttatgcatga 13659160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 279
Target Start/End: Complemental strand, 13651801 - 13651674
Alignment:
Q  152 agaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaacgtcat 251  Q
    |||||| | |||||||| |||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||| || || ||||  || |    
T  13651801 agaaactcgccaccaaagtcatcagtcattgacgtgaccatatcagcaaatttaccatgaggcaaaatcaacccgtacacaaaagctccgacaatatctt 13651702  T
Q  252 gtgtaccaagaatatctgttatgtatga 279  Q
    |||| ||||||||| ||||||| |||||    
T  13651701 gtgtgccaagaatacctgttatatatga 13651674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 13659417 - 13659349
Alignment:
Q  22 aaacaaagtgcttagaatctttagaacacacatcaagagtataatgataagtgtaaagggccaacttgg 90  Q
    |||||||||||||| ||||||  ||||||| | ||||| |||||| | |||||| ||||||||| ||||    
T  13659417 aaacaaagtgcttaaaatcttcggaacacataacaagattataataacaagtgttaagggccaagttgg 13659349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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