View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21004_low_17 (Length: 276)
Name: NF21004_low_17
Description: NF21004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21004_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 39017267 - 39017512
Alignment:
| Q |
18 |
acaacaaacagcagaagtgttcctctgttatcaccttctgctatttctgctatttgttgagctgcgaaagccgcgtcggaggttgcaagggatgaaaata |
117 |
Q |
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| T |
39017267 |
acaacaaacagcagaagtgttcctctgttatcaccttctgctatttctgctatttgttgagctgcgaaagccgcatcggaggttgcaagggatgaaaata |
39017366 |
T |
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| Q |
118 |
ttgctcctgcaatcgcaagtgaaggtgacacaaagttggtgttcttggttgagacaagaccctttggtaggttctgcatggtggtggttttgcatgttga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39017367 |
ttgctcctgcaatcgcaagtgaaggtgacacaaagttggtgttcttggttgagacaagaccctttggtaggttctgcatggtggtggttttgcatgttga |
39017466 |
T |
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| Q |
218 |
tgttagcttagtagtggtgctaaggttttgcaactttggtaggcct |
263 |
Q |
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| T |
39017467 |
tgttagcttagtagtggtgctaaggttttgcaactttggtaggcct |
39017512 |
T |
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