View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21004_low_20 (Length: 268)

Name: NF21004_low_20
Description: NF21004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21004_low_20
NF21004_low_20
[»] chr8 (9 HSPs)
chr8 (163-255)||(35245703-35245795)
chr8 (19-60)||(13004420-13004461)
chr8 (19-60)||(23145516-23145557)
chr8 (19-60)||(23146323-23146364)
chr8 (19-60)||(23147840-23147881)
chr8 (19-60)||(40057275-40057316)
chr8 (19-79)||(35245551-35245611)
chr8 (19-53)||(13109368-13109402)
chr8 (19-53)||(18672817-18672851)
[»] chr4 (2 HSPs)
chr4 (19-62)||(46991583-46991626)
chr4 (19-60)||(32943854-32943895)
[»] chr6 (1 HSPs)
chr6 (19-60)||(7909070-7909111)
[»] chr5 (3 HSPs)
chr5 (19-60)||(32509633-32509674)
chr5 (19-60)||(33450872-33450913)
chr5 (19-60)||(33971962-33972003)
[»] chr3 (3 HSPs)
chr3 (19-60)||(28844876-28844917)
chr3 (19-60)||(39345085-39345126)
chr3 (19-60)||(44952681-44952722)
[»] chr2 (2 HSPs)
chr2 (19-60)||(44107672-44107713)
chr2 (19-60)||(44111248-44111289)


Alignment Details
Target: chr8 (Bit Score: 89; Significance: 6e-43; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 163 - 255
Target Start/End: Original strand, 35245703 - 35245795
Alignment:
Q  163 tgctgagaaattttcgatctcagctttgattccacaatatgttacattttctcgggaaaatttcactttccgggaaaatcactgatatctttc 255  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35245703 tgctgagaaattttcgatctcagctttgattccacattatgttacattttctcgggaaaatttcactttccgggaaaatcactgatatctttc 35245795  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 13004420 - 13004461
Alignment:
Q  19 atgatttctagtcatgcccgataaccactccggcatgtccac 60  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  13004420 atgatttctagtcatgcccgataaccactccggcacgtccac 13004461  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 23145516 - 23145557
Alignment:
Q  19 atgatttctagtcatgcccgataaccactccggcatgtccac 60  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  23145516 atgatttctagtcatgcccgataaccactccggcacgtccac 23145557  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 23146323 - 23146364
Alignment:
Q  19 atgatttctagtcatgcccgataaccactccggcatgtccac 60  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  23146323 atgatttctagtcatgcccgataaccactccggcacgtccac 23146364  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 23147840 - 23147881
Alignment:
Q  19 atgatttctagtcatgcccgataaccactccggcatgtccac 60  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  23147840 atgatttctagtcatgcccgataaccactccggcacgtccac 23147881  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 40057275 - 40057316
Alignment:
Q  19 atgatttctagtcatgcccgataaccactccggcatgtccac 60  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  40057275 atgatttctagtcatgcccgataaccactccggcacgtccac 40057316  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 35245551 - 35245611
Alignment:
Q  19 atgatttctagtcatgcccgataaccactccggcatgtccacctcaacaaaattttttgtc 79  Q
    ||||||||||||||||||  |||||||||||  | |||||||||||||||| |||||||||    
T  35245551 atgatttctagtcatgcctaataaccactcccacctgtccacctcaacaaatttttttgtc 35245611  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 13109402 - 13109368
Alignment:
Q  19 atgatttctagtcatgcccgataaccactccggca 53  Q
    |||||||||||||||||||||||||||||||||||    
T  13109402 atgatttctagtcatgcccgataaccactccggca 13109368  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 18672817 - 18672851
Alignment:
Q  19 atgatttctagtcatgcccgataaccactccggca 53  Q
    |||||||||||||||||||||||||||||||||||    
T  18672817 atgatttctagtcatgcccgataaccactccggca 18672851  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 46991626 - 46991583
Alignment:
Q  19 atgatttctagtcatgcccgataaccactccggcatgtccacct 62  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  46991626 atgatttctagtcatgcccgataaccactccggcacgtccacct 46991583  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 32943895 - 32943854
Alignment:
Q  19 atgatttctagtcatgcccgataaccactccggcatgtccac 60  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  32943895 atgatttctagtcatgcccgataaccactccggcacgtccac 32943854  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 7909111 - 7909070
Alignment:
Q  19 atgatttctagtcatgcccgataaccactccggcatgtccac 60  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  7909111 atgatttctagtcatgcccgataaccactccggcacgtccac 7909070  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 32509674 - 32509633
Alignment:
Q  19 atgatttctagtcatgcccgataaccactccggcatgtccac 60  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  32509674 atgatttctagtcatgcccgataaccactccggcacgtccac 32509633  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 33450913 - 33450872
Alignment:
Q  19 atgatttctagtcatgcccgataaccactccggcatgtccac 60  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  33450913 atgatttctagtcatgcccgataaccactccggcacgtccac 33450872  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 33972003 - 33971962
Alignment:
Q  19 atgatttctagtcatgcccgataaccactccggcatgtccac 60  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  33972003 atgatttctagtcatgcccgataaccactccggcacgtccac 33971962  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 28844917 - 28844876
Alignment:
Q  19 atgatttctagtcatgcccgataaccactccggcatgtccac 60  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  28844917 atgatttctagtcatgcccgataaccactccggcacgtccac 28844876  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 39345126 - 39345085
Alignment:
Q  19 atgatttctagtcatgcccgataaccactccggcatgtccac 60  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  39345126 atgatttctagtcatgcccgataaccactccggcacgtccac 39345085  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 44952681 - 44952722
Alignment:
Q  19 atgatttctagtcatgcccgataaccactccggcatgtccac 60  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  44952681 atgatttctagtcatgcccgataaccactccggcacgtccac 44952722  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 44107672 - 44107713
Alignment:
Q  19 atgatttctagtcatgcccgataaccactccggcatgtccac 60  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  44107672 atgatttctagtcatgcccgataaccactccggcacgtccac 44107713  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 44111248 - 44111289
Alignment:
Q  19 atgatttctagtcatgcccgataaccactccggcatgtccac 60  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  44111248 atgatttctagtcatgcccgataaccactccggcacgtccac 44111289  T

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