View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21004_low_22 (Length: 249)
Name: NF21004_low_22
Description: NF21004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21004_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 252741 - 252979
Alignment:
| Q |
1 |
ttgctcatagagaaacttgatccaccnnnnnnnnnnaacctcaacacttcgattcattaagagatatatat-tttttattaatgtggagttcaatctaaa |
99 |
Q |
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| T |
252741 |
ttgctcatagagaaacttgatccacctattttttttaacctcaacacttcgattcattaagagatatatatatttttattaatgtggagttcaatctaaa |
252840 |
T |
|
| Q |
100 |
attaattaaaaatatgattagttaaaactgtttctatcaaagaaaaaactttgatattattcaaagaattcaaacaatatacctcgaaatcattaactct |
199 |
Q |
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| T |
252841 |
agtaattaaaaatatgattagttaaaactgtttctatcaaagaaaaaactttgatattattcaaagaattcaaacaatatacctcgaagtcattaactct |
252940 |
T |
|
| Q |
200 |
ttgagcgcaactatttagttaattttatgtagctcccta |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
252941 |
ttgagcgcaactatttagttaattttatgtagctcccta |
252979 |
T |
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