View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21004_low_27 (Length: 235)
Name: NF21004_low_27
Description: NF21004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21004_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 53 - 221
Target Start/End: Complemental strand, 38759869 - 38759700
Alignment:
| Q |
53 |
tctctctcttattaacctttctgaccttttctatgccatattaatgagctcatttcttgaaacgggatgccgtatacatgtttattttcttcaacnnnnn |
152 |
Q |
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| T |
38759869 |
tctctctcttattaaccttgatggccttttctatatcatattaatgagctcatttcttgaaactggatgccatatacaggtttattttcttcaacaaaaa |
38759770 |
T |
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| Q |
153 |
nnnt-agtgttgaaatatacgaagaagatgaatgtttgtaattgaaaagatcctttgtccaattgaaaat |
221 |
Q |
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| T |
38759769 |
aaaacagtgttgaaatatacgaagaagatgaatgtttgtaattgaaaagatcctttgtccaattgaaaat |
38759700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 221
Target Start/End: Complemental strand, 22689748 - 22689577
Alignment:
| Q |
48 |
ttttctctctctcttattaacctttctgaccttttctatgccatattaatgagctcatttcttgaaacgggatgccgtatacatgtttattttcttcaac |
147 |
Q |
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| T |
22689748 |
ttttttctctcttttactaacctttctagcctttcctatgccatattaatgacctcatttcttgaaactgaatgccatatgcaagtttattttcttccaa |
22689649 |
T |
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| Q |
148 |
nnnnnnnntagtgttgaaatatacgaagaagatgaatgtttgtaattgaaaagatcctttgtccaattgaaaat |
221 |
Q |
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| T |
22689648 |
aaaaaaac-agtgttgaaatatacgaagaagatgaatgttt-taattgaaaagatcctttgtccaattgaaaat |
22689577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 48 - 221
Target Start/End: Original strand, 3931499 - 3931674
Alignment:
| Q |
48 |
ttttctctctctcttattaacctttctgaccttttctatgccatattaatgagctcatttcttgaaacgggatgccgtatacatgtttattttcttcaac |
147 |
Q |
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| T |
3931499 |
ttttttctctctcttattaacctttctggccttttctatgtcatattaatgagctcatttcttgaaactggatgctatatacaggtttattttcttcaac |
3931598 |
T |
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| Q |
148 |
--nnnnnnnntagtgttgaaatatacgaagaagatgaatgtttgtaattgaaaagatcctttgtccaattgaaaat |
221 |
Q |
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| T |
3931599 |
aaaaaaaaaacagttttgaaatatacgacgaagatgaatgtttgcaattgaaaagatcttttgtccaattgaaaat |
3931674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 5160992 - 5160929
Alignment:
| Q |
51 |
tctctctctcttattaacctttctgaccttttctatgccatattaatgagctcatttcttgaaac |
115 |
Q |
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| T |
5160992 |
tctctctctcttattaactttt-tcacattttctgtgccatattaaagagctcctttcttgaaac |
5160929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 44902210 - 44902276
Alignment:
| Q |
48 |
ttttctctctctcttattaacctttctgaccttttctatgccatattaatgagctcatttcttgaaac |
115 |
Q |
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| T |
44902210 |
ttttctctctctcttattaatcttt-tcaccttttctgtgtcatattaaagaactcctttcttgaaac |
44902276 |
T |
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