View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21004_low_5 (Length: 441)
Name: NF21004_low_5
Description: NF21004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21004_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 21191911 - 21191674
Alignment:
| Q |
13 |
aatatagaaagatgtatgttgtgataatgtgaaacaaaataaaaaccattcttaacatgtatatacatatttcttcataaaatcaaaacaatatctatag |
112 |
Q |
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| T |
21191911 |
aatatagaaagatgtatgttgtgataatgtgaaagaaaataaaaaccattcttaacatgtatattcatatttcttcaaaaaatcaaaacaatatctatag |
21191812 |
T |
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| Q |
113 |
atgaataccaagaaaaacacacctcattttcgttccttgcattggaatattctctatcatccagtttgttgctaggagaaatctttgtgagaagatctaa |
212 |
Q |
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| T |
21191811 |
atgaacaccaagaaaaacatacctcattttcgttccttgcattggaatattctctatcatccagtttgttgctaggagaaatctttgtgagaagatctaa |
21191712 |
T |
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| Q |
213 |
actagtctacaaaatcaaagtggaagatctaaattagt |
250 |
Q |
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| T |
21191711 |
actagtctacaaaatcaaagtggaagatctaaattagt |
21191674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 293 - 441
Target Start/End: Complemental strand, 21191588 - 21191440
Alignment:
| Q |
293 |
tacatacatctacgtgatgatgctccatttggtgtagtgttaggtcattaactggactcattttcttctctgcaaagaaatcaacctcatccataattag |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21191588 |
tacatacatctacgtgatgatgctccatttggtgtagtgttaggtcattaactggactcattttcttctctgcaaagaaatcaacctcatccataattag |
21191489 |
T |
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| Q |
393 |
tcgttttccattaaaagacatgacttgagaagaagaagaatgtgaaact |
441 |
Q |
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| T |
21191488 |
tcgttttccattaaaagacatgactcgagaagaagaagaatgtggaact |
21191440 |
T |
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