View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21005_high_3 (Length: 361)
Name: NF21005_high_3
Description: NF21005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21005_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 79 - 351
Target Start/End: Complemental strand, 32984599 - 32984315
Alignment:
| Q |
79 |
acttatgaattagtgtgccttgttgttctataaagagatgttgcatatatacgtcagaaaaactcaaaatttgcatatgtatagtgtcattttcatccaa |
178 |
Q |
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| T |
32984599 |
acttatgaattagtgtgccttgttgttctataaagagatgttgcatatatacgtcagaaaaacacaaaatttgcatatgtatagtgtcattttcatccaa |
32984500 |
T |
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| Q |
179 |
tttcttacttacatcatcagtctattctcttatttgaaataaaaaatatatatcatcattctactctc------------taagtacagnnnnnnnnctt |
266 |
Q |
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| T |
32984499 |
tttcttacttacatcatcagtctattctcttatttgaaataaaaaatatatatcatcattctactctctaagcataagagtaagtacagttttttttctt |
32984400 |
T |
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| Q |
267 |
ccacaaattaccaataaaaagaaatttttgttgtgtttatgcaaatcacatcaaattttttaaaatgttatgaaagaagtctgtg |
351 |
Q |
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| T |
32984399 |
ccataaattaccattaaaaagaaatttgtgttgtgtttatgcaaatcacatcaaaatttctaaaatgttatgaaagaaatctgtg |
32984315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 32984697 - 32984613
Alignment:
| Q |
18 |
aactcttggattaaagactctaattgcatatgtgatgattggtagcgaaacgttacttttcacttatgaattagtgtgccttgtt |
102 |
Q |
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| T |
32984697 |
aactcttggattaaagactctaattgcatatgtgatgattggtagcgaaacgttacttttcacttatgaattagcgtgccttgtt |
32984613 |
T |
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