View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21005_low_1 (Length: 376)
Name: NF21005_low_1
Description: NF21005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21005_low_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 22738280 - 22738634
Alignment:
| Q |
18 |
ccttttgaatggtgaagatagtgtaagcaacaacaattctgattccaaaaagacactaagaaatgaaatttcaaccagttattcaaatgctggatttttc |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22738280 |
ccttttgaatggtgaagctagtgtaagcaacaacaattctgattccaaaaagacactaagaaatgaaagttcaaccagttattcaaatgctggattttta |
22738379 |
T |
|
| Q |
118 |
agcattcttacattctcatggatgactccactaatagctttaggcaatnnnnnnnntttagaccatgaagaccttccattgctttctaccaatgacagtg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
22738380 |
agcattcttacattctcatggatgactccactaatagctttaggcaataaaaagactttaaaccatgaagaccttccattgctttctaccaatgaatgtg |
22738479 |
T |
|
| Q |
218 |
ccaatggaactttttcaactttcagaaatgagcttcagttaaagtgtggtaatgttaggaatgtgaccactatcaacctcgccaaggtgttgttcttctc |
317 |
Q |
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|||||||||||||| ||||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22738480 |
ccaatggaacttttacaacttttagaaacaagcttgagttggagtgtggtaatgttaggaatgtgaccactattaacctcgccaaggtgttgttcttctc |
22738579 |
T |
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| Q |
318 |
gacatggcaagggattcttctatctggattttttgcattggtgtacacatgtgct |
372 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
22738580 |
gacatggcaagggattcttctatctggcttttttgcattgttgtacacatgtgct |
22738634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 22720375 - 22720049
Alignment:
| Q |
18 |
ccttttgaatggtgaagatagtgtaagcaacaacaattctgattccaaaaagacactaagaaatgaaatttcaaccagttattcaaatgctggatttttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22720375 |
ccttttgaatggtgaagatagtgtaagcaacaacaattctgattccaaaaagacactaagaaatgaaagttcaaccagttattcaaatgctggatttttt |
22720276 |
T |
|
| Q |
118 |
agcattcttacattctcatggatgactccactaatagctttaggcaatnnnnnnnntttagaccatgaagaccttccattgctttctaccaatgacagtg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
22720275 |
agcattcttacattctcatggatgactccactaatagctttaggcaataaaaagactttaaaccatgaagaccttccattgctttctaccaatgagtgtg |
22720176 |
T |
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| Q |
218 |
ccaatggaactttttcaactttcagaaatgagcttcagttaaagtgtggtaatgttaggaatgtgaccactatcaacctcgccaaggtgttgttcttctc |
317 |
Q |
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|||||||||||||| ||||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22720175 |
ccaatggaacttttacaacttttagaaacaagcttgagttggagtgtggtaatgttaggaatgtgaccactattaacctcgccaaggtgttgttcttctc |
22720076 |
T |
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| Q |
318 |
gacatggcaagggattcttctatctgg |
344 |
Q |
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||||||||||||||||||||||||||| |
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| T |
22720075 |
gacatggcaagggattcttctatctgg |
22720049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 22728709 - 22728351
Alignment:
| Q |
18 |
ccttttgaatggtgaagatagtgtaagcaacaacaattctgattccaaaaagacactaagaaatgaaatttcaaccagttattcaaatgctggatttttc |
117 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22728709 |
ccttttgaatggtgaaggtactgtaagcaacaacaattttgattccaaaaagacactaagaaatgaaatttcaaccagttatttgaatgctggatttttc |
22728610 |
T |
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| Q |
118 |
agcattcttacattctcatggatgactccactaatagctttaggcaatnnnnnnnntttagaccatgaagaccttccattgctttctaccaatgacagtg |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||| | | |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22728609 |
agcattgttacattctcatggatgactccactaataactttaggaagtaaaaagactttagaccatgaagaccttccactgctttctaccaatgacagtg |
22728510 |
T |
|
| Q |
218 |
ccaatggaactttttcaactttcagaaatgagcttcagttaaagtgtggtaatgttaggaatgtgaccactatcaacctcgccaaggtgttgttcttctc |
317 |
Q |
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|||||||||||||||||||||| | ||| |||||| | || |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
22728509 |
ccaatggaactttttcaacttttaaaaacgagcttgacttgaagtgtggtaatgttaggaatgtgaccactattaacctcgccaaggtcttgttcttctc |
22728410 |
T |
|
| Q |
318 |
gacatggcaagggattcttctatctggattttttgcattggtgtacacatgtgctactt |
376 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22728409 |
tacatggcaagggatttttctatctggcttttttgcattggtgtacacatgtgctactt |
22728351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 5590843 - 5591201
Alignment:
| Q |
18 |
ccttttgaatggtgaagatagtgtaagcaacaacaattctgattccaaaaagacactaagaaatgaaatttcaaccagttattcaaatgctggatttttc |
117 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5590843 |
ccttttgaatggtgaaggtactgtaagcaacaacaattttgattccaaaaagacactaagaaatgaaatttcaaccagttatttgaatgctggatttttc |
5590942 |
T |
|
| Q |
118 |
agcattcttacattctcatggatgactccactaatagctttaggcaatnnnnnnnntttagaccatgaagaccttccattgctttctaccaatgacagtg |
217 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| ||||||| | | |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5590943 |
agcattgttacattctcatggatgactccactaataactttaggaagtaaaaagactttagaccatgaagaccttccactgctttctaccaatgacagtg |
5591042 |
T |
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| Q |
218 |
ccaatggaactttttcaactttcagaaatgagcttcagttaaagtgtggtaatgttaggaatgtgaccactatcaacctcgccaaggtgttgttcttctc |
317 |
Q |
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|||||||||||||||||||||| | ||| |||||| | || |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
5591043 |
ccaatggaactttttcaacttttaaaaacgagcttgacttgaagtgtggtaatgttaggaatgtgaccactattaacctcgccaaggtcttgttcttctc |
5591142 |
T |
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| Q |
318 |
gacatggcaagggattcttctatctggattttttgcattggtgtacacatgtgctactt |
376 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5591143 |
tacatggcaagggatttttctatctggcttttttgcattggtgtacacatgtgctactt |
5591201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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