View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21005_low_2 (Length: 373)
Name: NF21005_low_2
Description: NF21005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21005_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 37338781 - 37339153
Alignment:
| Q |
1 |
attcgttgccctggaacttacattttgcatattggtttgtaagcatgagaggttttcttaccatgacattttgaattagaggggcattggaatttttat- |
99 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37338781 |
attcgttgccatgtaacttacattttgcatattggtttgtaagcatgagaggttttcttaccatgacattttgaattagaggggcattggaatttttatt |
37338880 |
T |
|
| Q |
100 |
------------------tcatgctgtataaaatcacattataaaggcatatcannnnnnnnnnnnnnnnncatttgattattctttttgttggactatg |
181 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37338881 |
catgttgtattcaattcttcattctgtataaaatcacattataaaggcatatcatttataattttttt---catttgattattctttttgttggactatg |
37338977 |
T |
|
| Q |
182 |
gaggaatgttgataagataattttaatttaacttggaatccagattgattgnnnnnnnnnatacgaaggtttaacttttagattttctactattgtttta |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37338978 |
gaggaatgttgataagataattttaatttaacttggaatccagattgattgtttttttttatacgaaggtttaacttttagattttctactattgtttta |
37339077 |
T |
|
| Q |
282 |
taattcaccaatatatcaaattttataaaggcatataaaggtatatcaaattttatgcattttgtccatacttctt |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37339078 |
taattcaccaatatatcaaattttataaaggcatataaaggtatatcaaattttatgcattttgtccatacttctt |
37339153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 15297596 - 15297910
Alignment:
| Q |
1 |
attcgttgccctggaacttacattttgcatattggtttgtaagcatgagaggttttcttaccatgacattttgaattagaggggcattggaattttta-- |
98 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||| |
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| T |
15297596 |
attcgttgcactgtaacttacattttgcatattggtttgtaagcatgagaggttttctcaccatgacattttgaaatagatgggcattggaatttttatg |
15297695 |
T |
|
| Q |
99 |
-----------------ttcatgctgtataaaatcacattataaaggcatatcannnnnnnnnnnnnnnnncatttgattattctttttgttggactatg |
181 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
15297696 |
cattttgtattcaattcttcattctgtataaaatcacattataaaggcatatca---tttataatttttttcatttgattattctttttattggactatg |
15297792 |
T |
|
| Q |
182 |
gaggaatgttgataagataattttaatttaacttggaatccagattgattgnnnnnnnnnatacgaaggtttaacttttagattttctactattgtttta |
281 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
15297793 |
gaggaatgttgataagataattttaatttaacatggaatccagattgattg-ttttttttatacgaaggtttaacttttcgattttctactattgtttta |
15297891 |
T |
|
| Q |
282 |
taattcaccaatatatcaa |
300 |
Q |
| |
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||||||||||||||||||| |
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| T |
15297892 |
taattcaccaatatatcaa |
15297910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 153 - 300
Target Start/End: Complemental strand, 47967111 - 47966962
Alignment:
| Q |
153 |
catttgattattctttttgttggactat--ggaggaatgttgataagataattttaatttaacttggaatccagattgattgnnnnnnnnnatacgaagg |
250 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||| |||||||||||| ||||| ||||||||| |
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| T |
47967111 |
catttgattattctttttattggactatatggaggaatgttgataagataatttgaatttaacatggaatccagatcgattgttttcttttatacgaagg |
47967012 |
T |
|
| Q |
251 |
tttaacttttagattttctactattgttttataattcaccaatatatcaa |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
47967011 |
tttagcttttagattttctactattgttttataattcaccaaaatatcaa |
47966962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 47967234 - 47967181
Alignment:
| Q |
46 |
tgagaggttttcttaccatgacattttgaattagaggggcattggaatttttat |
99 |
Q |
| |
|
||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| |
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|
| T |
47967234 |
tgagaggttttctcaccgtgacattttcaattagaggggcattggaatttttat |
47967181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 47967162 - 47967126
Alignment:
| Q |
99 |
ttcatgctgtataaaatcacattataaaggcatatca |
135 |
Q |
| |
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||||| || |||||||||||||||||||||||||||| |
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| T |
47967162 |
ttcattctctataaaatcacattataaaggcatatca |
47967126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 27264512 - 27264463
Alignment:
| Q |
22 |
attttgcatattggtttgtaagcatgagaggttttcttaccatgacatttt |
72 |
Q |
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|||||| |||||||||||||||||| ||||||||||| ||| ||||||||| |
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| T |
27264512 |
attttgaatattggtttgtaagcataagaggttttctcacc-tgacatttt |
27264463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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