View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21005_low_5 (Length: 277)
Name: NF21005_low_5
Description: NF21005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21005_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 22728308 - 22728054
Alignment:
| Q |
1 |
atgatgaaaacaaggttaaaaatgaaggctatattttggcaatgacgtttgtagcggcaaagcttgtcgagtgtcttatgcagaggcaatggatgtttaa |
100 |
Q |
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| T |
22728308 |
atgatgaaaacaaagctaaaagtgaaggctatattttggctatgatgtttgttgcggcaaagcttgtcgagtgtcttatgcagaggcaatggatgtttaa |
22728209 |
T |
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| Q |
101 |
gttccaacaggttggtgttaggatgcaatcaatgttggtatcaatgatctatgctaaaggtttgaccctttcgtgtcaatcaaaaacgaaagagggacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22728208 |
gttccaacaggttggtgttaggatgcaatcaatgttggtatcaatgatctatgctaaaggtttgaccctttcgtgtcaatcaaaaacgaaagagggacac |
22728109 |
T |
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| Q |
201 |
agcagcggcgaaatcatcaacttaatgactgttgatgctggaaggataggtgaat |
255 |
Q |
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| T |
22728108 |
agcagcggcgaaatcattaacttaatgactgttgatgctgtaaggataggtgaat |
22728054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 22738681 - 22738929
Alignment:
| Q |
1 |
atgatgaaaacaaggttaaaaatgaaggctatattttggcaatgacgtttgtagcggcaaagcttgtcgagtgtcttatgcagaggcaatggatgtttaa |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||| |||||| | ||||||||||||||| |||||| |||| ||| ||||||||||| |
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| T |
22738681 |
atgatgaaaacaaggctaaaaatgaaggctatattttggctatgatgtttgttggggcaaagcttgtcgaatgtctttctcagaagcactggatgtttaa |
22738780 |
T |
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| Q |
101 |
gttccaacaggttggtgttaggatgcaatcaatgttggtatcaatgatctatgctaaaggtttgaccctttcgtgtcaatcaaaaacgaaagagggacac |
200 |
Q |
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| T |
22738781 |
gttccaacaggttggtgttaggatacaatcaatgttggtgtcaataatctatgctaaaggtttgacccttttgtatcaat------cgaaagagggatac |
22738874 |
T |
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| Q |
201 |
agcagcggcgaaatcatcaacttaatgactgttgatgctggaaggataggtgaat |
255 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22738875 |
agcagcggtgaaatcatcaacttaatgactgttgatgctgaaaggataggtgaat |
22738929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 5591244 - 5591303
Alignment:
| Q |
1 |
atgatgaaaacaaggttaaaaatgaaggctatattttggcaatgacgtttgtagcggcaa |
60 |
Q |
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||||||||||||| | ||||| |||||||||||||||||| |||| |||||| ||||||| |
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| T |
5591244 |
atgatgaaaacaaagctaaaagtgaaggctatattttggctatgatgtttgttgcggcaa |
5591303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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