View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21006_high_1_N (Length: 545)
Name: NF21006_high_1_N
Description: NF21006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21006_high_1_N |
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Alignment Details
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 29 - 536
Target Start/End: Original strand, 31560412 - 31560919
Alignment:
| Q |
29 |
attctttacaacaaattgttgaaccacgtgagttctggtataaggtcgcatactcgcatctaacatgatttattttgcagtcattcactatgtgtatggt |
128 |
Q |
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| T |
31560412 |
attctttacaacaaattgttgaaccacgtgagttctggtataaggtcgcatactcgcatctaacatgatttattttgcagtcattcactatgtgtatggt |
31560511 |
T |
|
| Q |
129 |
ggttttctgtgtgagagagcaaacaaaactccatcacgcagttcgtcgcagttttaaatatcaaccattgatttgagattgaatgactcagattacacat |
228 |
Q |
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| T |
31560512 |
ggttttctgtgtgagagagcaaacaagactccatcacgcagttcgttgcagttttaaatatcaaccattgatttgagattgaatgactcagattacacat |
31560611 |
T |
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| Q |
229 |
tcattcaatttattgtaattgatctcaatcgttgatttagacggacattcgagaataatctacc-cacctattctgattccatactttacatagacaata |
327 |
Q |
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| T |
31560612 |
tcattcaatttattataattgatctcaatcgttgatttagacggacattcgag-ataagttaccgcagctattctgattccatactttacatagacaata |
31560710 |
T |
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| Q |
328 |
acttgccttgctgaaaattctagagaaaagctttctgaggcagtgaggctcactgtcttacagacttgcatccagttataaagagctgtctcaatgatga |
427 |
Q |
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| T |
31560711 |
acttgccttgctgaaaattctagagaaaagctttctgaggcagtgaggctcactgtcttacagacttgcatccagttataaagagctgtctcaatgatga |
31560810 |
T |
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| Q |
428 |
tgttattttataagaacaatctcaaggaagggcctaaataaaagtactataaagtatttacgaataatataaagtactatagaaggagaaggaaatgaac |
527 |
Q |
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| T |
31560811 |
tgctattttataagaacaatctcaaggaagtgcctaaataaaagtactataaagtatttacgaatagtataaagtactatagaaggagtaggaaatgaac |
31560910 |
T |
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| Q |
528 |
aagaataat |
536 |
Q |
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| T |
31560911 |
aagaataat |
31560919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 85 - 282
Target Start/End: Original strand, 31557643 - 31557838
Alignment:
| Q |
85 |
catctaacatgatttattttgcagtcattcactatgtgtatggtggttttctgtgtgagagagcaaacaaaactccatcacgcagttcgtcgcagtttta |
184 |
Q |
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| T |
31557643 |
catctaacatgatttattttgcactcattcactatgcatatgatggttatatgtgtgagatagcaaacaaaactcaatcacgcagttcgtcgcagtttta |
31557742 |
T |
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| Q |
185 |
aatatcaaccattgatttgagattgaatgactcagattacacattcattcaatttattgtaattgatctcaatcgttgatttagacggacattcgaga |
282 |
Q |
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| T |
31557743 |
aatatcaaccattgattttagattgaatgactcagatt--acattcatttaatttattgtaactgatctcaaccattgatttagacggacattcgaga |
31557838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 9837947 - 9838039
Alignment:
| Q |
162 |
tcacgcagttcgtcgcagttttaaatatcaaccattgatttgagattgaatgactcagattacacattcattcaatttattgtaattgatctc |
254 |
Q |
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| T |
9837947 |
tcacgcagttcgtcgcagttttaaatctcaaccattgatttgagattgaaccgctcagattacacattcatttaatttattgttactgatctc |
9838039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 371 - 455
Target Start/End: Original strand, 9838278 - 9838362
Alignment:
| Q |
371 |
tgaggctcactgtcttacagacttgcatccagttataaagagctgtctcaatgatgatgttattttataagaacaatctcaagga |
455 |
Q |
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| T |
9838278 |
tgaggctcactgtcttacacacttgcatccagttataaagagctgtctcaatgatgatgctactttacacgaacaatctcaagga |
9838362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 381
Target Start/End: Original strand, 31558017 - 31558060
Alignment:
| Q |
338 |
ctgaaaattctagagaaaagctttctgaggcagtgaggctcact |
381 |
Q |
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| T |
31558017 |
ctgaatattctagagaaaagctttctgaggcagtgaggctcact |
31558060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 31557576 - 31557618
Alignment:
| Q |
29 |
attctttacaacaaattgttgaaccacgtgagttctggtataa |
71 |
Q |
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| T |
31557576 |
attctttacaacaaattgttgaaccaagtgatttctggtataa |
31557618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 336
Target Start/End: Original strand, 9838124 - 9838156
Alignment:
| Q |
304 |
attccatactttacatagacaataacttgcctt |
336 |
Q |
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| T |
9838124 |
attccatactttacatagacagtaacttgcctt |
9838156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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