View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21006_high_2 (Length: 492)
Name: NF21006_high_2
Description: NF21006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21006_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 314
Target Start/End: Complemental strand, 1255911 - 1255615
Alignment:
| Q |
15 |
gggaagaagaaaaccgagatggaaaaactgtcatatcatttggcatggtttcggaatgtggcggaggcttatggtcttaagcctttgtactgtggaggag |
114 |
Q |
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| T |
1255911 |
gggaagaagaaaaccgagatggaaaaactgtcatatcatttggcatggtttcggaatgtggcggaggcttatggtcttaagcctttgtacggtgttga-- |
1255814 |
T |
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| Q |
115 |
cagtcgagtgacatgaagaaaccaacatctttcactttgccattggtgaaataaccatcaaactagatcatatgccatgcgttttgaacgtgcctatctt |
214 |
Q |
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| T |
1255813 |
caga-gagtggcatgaagagaccaatatctttcagtttgccattggtgaaataaccatcaaactagatcatatgccatgcgttttgaacgtgcctatcca |
1255715 |
T |
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| Q |
215 |
tggtaatctgatgaaccatcgatcgcaaatttccaaagaatgttgtgcaactttgcataatgacttgcttgattaaacattgaagatgtttatggtgagt |
314 |
Q |
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| T |
1255714 |
tggtaatctgatgaaccatcgatcccaaatttccaaagaatgttgtgcaactttgcataatgacttgcttgattagacattgaagatgtttatgttgagt |
1255615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 320 - 464
Target Start/End: Complemental strand, 1255560 - 1255402
Alignment:
| Q |
320 |
aggatcatcacacgaaagccatacagttggataatgcccaagggatgg--------------gaacatcactatgtgaatatgagattacctattggtag |
405 |
Q |
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| T |
1255560 |
aggatcatcacacaaaagccatacagttggataatgcccaagggatggaggctgagagatgggaacatcactatgtgaatatgagattacctattggtag |
1255461 |
T |
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| Q |
406 |
accttctctacaaacaagagcaattagtatgttcatgcggtgtttctattgtacctctt |
464 |
Q |
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| T |
1255460 |
actttctctacaaacaagagcaattagtatgttcatgcggtgtttctattgtacctctt |
1255402 |
T |
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