View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21006_high_3 (Length: 360)

Name: NF21006_high_3
Description: NF21006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21006_high_3
NF21006_high_3
[»] chr5 (7 HSPs)
chr5 (30-351)||(35904643-35904980)
chr5 (37-209)||(33618061-33618233)
chr5 (297-338)||(30502395-30502436)
chr5 (297-338)||(30542738-30542779)
chr5 (298-338)||(6471897-6471937)
chr5 (298-338)||(38749571-38749611)
chr5 (252-292)||(42893409-42893449)
[»] chr2 (8 HSPs)
chr2 (34-179)||(44831161-44831310)
chr2 (300-338)||(28677920-28677958)
chr2 (261-338)||(36756312-36756392)
chr2 (297-338)||(12668430-12668471)
chr2 (297-338)||(18276532-18276573)
chr2 (298-338)||(21616773-21616813)
chr2 (261-320)||(35056897-35056959)
chr2 (251-287)||(35449561-35449597)
[»] chr6 (13 HSPs)
chr6 (227-295)||(5000560-5000628)
chr6 (261-338)||(16766708-16766788)
chr6 (296-338)||(33468388-33468430)
chr6 (297-338)||(13851747-13851788)
chr6 (268-338)||(1532251-1532321)
chr6 (296-338)||(19040363-19040405)
chr6 (297-338)||(7265600-7265641)
chr6 (297-338)||(9025501-9025542)
chr6 (298-338)||(7151423-7151463)
chr6 (297-337)||(8931609-8931649)
chr6 (297-337)||(11591877-11591917)
chr6 (300-340)||(13360382-13360422)
chr6 (297-337)||(26562701-26562741)
[»] chr4 (9 HSPs)
chr4 (34-118)||(37023156-37023240)
chr4 (227-331)||(22234824-22234931)
chr4 (277-338)||(19230297-19230357)
chr4 (297-338)||(54580030-54580071)
chr4 (298-338)||(15029776-15029816)
chr4 (227-295)||(24613635-24613703)
chr4 (261-336)||(30982846-30982924)
chr4 (298-338)||(36635335-36635375)
chr4 (298-338)||(46180944-46180984)
[»] chr3 (8 HSPs)
chr3 (227-338)||(29508455-29508564)
chr3 (297-338)||(7928461-7928502)
chr3 (244-338)||(12704613-12704705)
chr3 (298-338)||(16192758-16192798)
chr3 (242-338)||(8039784-8039883)
chr3 (227-292)||(25093551-25093616)
chr3 (298-338)||(15314884-15314924)
chr3 (298-338)||(25948895-25948935)
[»] scaffold0050 (1 HSPs)
scaffold0050 (227-338)||(70289-70392)
[»] chr7 (13 HSPs)
chr7 (122-176)||(43725405-43725459)
chr7 (252-338)||(7438717-7438806)
chr7 (227-292)||(21880201-21880266)
chr7 (227-338)||(13770702-13770810)
chr7 (298-338)||(17307904-17307944)
chr7 (262-338)||(20549802-20549870)
chr7 (297-335)||(5835261-5835299)
chr7 (261-338)||(6630880-6630960)
chr7 (261-338)||(11665408-11665488)
chr7 (261-338)||(32308131-32308211)
chr7 (227-292)||(598257-598322)
chr7 (297-338)||(7328698-7328739)
chr7 (297-338)||(18013081-18013122)
[»] scaffold0036 (1 HSPs)
scaffold0036 (227-338)||(9681-9795)
[»] chr1 (15 HSPs)
chr1 (227-338)||(9828055-9828169)
chr1 (263-338)||(26238086-26238160)
chr1 (261-292)||(43492473-43492504)
chr1 (223-338)||(5898207-5898314)
chr1 (297-338)||(398772-398813)
chr1 (297-338)||(1486716-1486757)
chr1 (297-338)||(1864887-1864928)
chr1 (297-338)||(7918218-7918259)
chr1 (297-338)||(17754322-17754363)
chr1 (297-338)||(25361897-25361938)
chr1 (305-338)||(31672910-31672943)
chr1 (297-338)||(34712390-34712431)
chr1 (297-338)||(44482241-44482282)
chr1 (252-292)||(21530738-21530778)
chr1 (298-338)||(25098563-25098603)
[»] scaffold0123 (1 HSPs)
scaffold0123 (235-337)||(44467-44572)
[»] chr8 (3 HSPs)
chr8 (300-338)||(4611545-4611583)
chr8 (297-338)||(11927093-11927134)
chr8 (297-338)||(34897096-34897137)
[»] scaffold1528 (1 HSPs)
scaffold1528 (297-338)||(1046-1087)
[»] scaffold0066 (1 HSPs)
scaffold0066 (305-338)||(33378-33411)
[»] scaffold0697 (1 HSPs)
scaffold0697 (252-292)||(1693-1733)


Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 30 - 351
Target Start/End: Complemental strand, 35904980 - 35904643
Alignment:
Q  30 tcatgtggagagtttcctaaggatgatgagttgagtctttatgatgggtttgtgatcactggtagttgtaatgatgcttatggaaatgagaaatggatat 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35904980 tcatgtggagagtttcctaaggatgatgagttgagtctttatgatgggtttgtgatcactggtagttgtaatgatgcttatggaaatgagaaatggatat 35904881  T
Q  130 gtgatcttgtcacattgattaagaaattgaactccatgcagacaaaaatccttggcgtttgttttagccaccaggtaattaattgttaatttatataaag 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35904880 gtgatcttgtcacattgattaagaaattgaactccatgcagacaaaaatcattggcgtttgttttggccaccaggtaattaattgttaatttatataaag 35904781  T
Q  230 cacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttg----------------tgtctgacaccgacatgaagacacatataattacac 313  Q
    |||| |||||||||||||||| ||||| ||||||||||||||||||||                ||||||||||| ||||||||||||||||||||||||    
T  35904780 cacggacacttatcggattaagcgtgtcctagtgtcggacatgtgttgtgtcggacatgtgttgtgtctgacaccaacatgaagacacatataattacac 35904681  T
Q  314 tgaattaagttattttttcaaattacttggtcctttgc 351  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  35904680 tgaattaagttattttttcaaattacttggtccattgc 35904643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 37 - 209
Target Start/End: Original strand, 33618061 - 33618233
Alignment:
Q  37 gagagtttcctaaggatgatgagttgagtctttatgatgggtttgtgatcactggtagttgtaatgatgcttatggaaatgagaaatggatatgtgatct 136  Q
    |||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||| |||||| ||||||||| ||    
T  33618061 gagagttttctaaggatgatgaattgagtctctatgatgggtttgtgatcactggtagttgcagtgatgcctatggaaataagaaattgatatgtgacct 33618160  T
Q  137 tgtcacattgattaagaaattgaactccatgcagacaaaaatccttggcgtttgttttagccaccaggtaatt 209  Q
    |||||||||||||||| ||||  ||| || ||| ||||||||||||||| || ||||| |||||| |||||||    
T  33618161 tgtcacattgattaagtaattagacttcaagcacacaaaaatccttggcattggttttggccaccgggtaatt 33618233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 30502395 - 30502436
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||||||||||||||||||||||||| ||||| ||||||||    
T  30502395 gacacatataattacactgaattaagtgattttctcaaatta 30502436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 30542738 - 30542779
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||||||||||||||||||||||||| ||||| ||||||||    
T  30542738 gacacatataattacactgaattaagtgattttctcaaatta 30542779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 6471897 - 6471937
Alignment:
Q  298 acacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||||||||||||||||||||| || ||||| ||||||||    
T  6471897 acacatataattacactgaattatgtgattttctcaaatta 6471937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 38749571 - 38749611
Alignment:
Q  298 acacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||||||||||||| ||||||| || ||||||||||||||    
T  38749571 acacatataattacattgaattatgtcattttttcaaatta 38749611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 42893449 - 42893409
Alignment:
Q  252 cgtgttctagtgtcggacatgtgttgtgtctgacaccgaca 292  Q
    ||||| || |||||||||| |||||||||||||||||||||    
T  42893449 cgtgtcctggtgtcggacacgtgttgtgtctgacaccgaca 42893409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 34 - 179
Target Start/End: Complemental strand, 44831310 - 44831161
Alignment:
Q  34 gtggagagtttcctaaggatgatgagttgagtctttatgatgggtttgtgatc----actggtagttgtaatgatgcttatggaaatgagaaatggatat 129  Q
    |||||||||||  |||||||||||  |||||||| ||||||||||||||||||    ||||||||||| |||||||||| ||||||| |||| |||||||    
T  44831310 gtggagagttttttaaggatgatgtattgagtctatatgatgggtttgtgatcgatcactggtagttgcaatgatgcttgtggaaataagaagtggatat 44831211  T
Q  130 gtgatcttgtcacattgattaagaaattgaactccatgcagacaaaaatc 179  Q
    |||| ||||||||| |||||||||||||  ||| |||||| |||| ||||    
T  44831210 gtgaccttgtcacaatgattaagaaattagactacatgcacacaagaatc 44831161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 28677958 - 28677920
Alignment:
Q  300 acatataattacactgaattaagttattttttcaaatta 338  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  28677958 acatataattacactgaattatgtgattttttcaaatta 28677920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 338
Target Start/End: Original strand, 36756312 - 36756392
Alignment:
Q  261 gtgtcggacatgtgttgtgtctgacaccgacatgaa---gacacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||||||||||||||||||  |||||  ||| ||    ||||| |||||||||||||||||| ||||||| |||||||||    
T  36756312 gtgtcggacatgtgttgtgttcgacactaacacgacaccgacacttataattacactgaattatgttatttcttcaaatta 36756392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 12668430 - 12668471
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||| |||||||||||||||||| || ||||||||||||||    
T  12668430 gacacttataattacactgaattatgtcattttttcaaatta 12668471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 18276573 - 18276532
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||| |||||||||||||||||||| ||||| ||||||||    
T  18276573 gacacacataattacactgaattaagtgattttctcaaatta 18276532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 21616813 - 21616773
Alignment:
Q  298 acacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||||||||||||||||||||| || ||||| ||||||||    
T  21616813 acacatataattacactgaattatgtgattttctcaaatta 21616773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 320
Target Start/End: Complemental strand, 35056959 - 35056897
Alignment:
Q  261 gtgtcggacatgtgttgtgtctgacaccgacatgaa---gacacatataattacactgaatta 320  Q
    |||||||||| |||| ||||| |||||||||| ||    ||||||||||||||||||||||||    
T  35056959 gtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaatta 35056897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 35449597 - 35449561
Alignment:
Q  251 acgtgttctagtgtcggacatgtgttgtgtctgacac 287  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  35449597 acgtgttctggtgtcggacatgtgtcgtgtctgacac 35449561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 5000560 - 5000628
Alignment:
Q  227 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacatga 295  Q
    |||||||||||||  |||||||| |||||| || |||||||| |||||| |||||||||||||||||||    
T  5000560 aagcacgaacactcttcggattagacgtgtcctggtgtcggatatgtgtcgtgtctgacaccgacatga 5000628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 338
Target Start/End: Complemental strand, 16766788 - 16766708
Alignment:
Q  261 gtgtcggacatgtgttgtgtctgacaccgacatgaa---gacacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||||||| |||||||||| |||||||||| ||    ||||| | |||||||||||||||| || ||||||||||||||    
T  16766788 gtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaatta 16766708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 33468388 - 33468430
Alignment:
Q  296 agacacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  33468388 agacatatataattacattgaattaagttattttttcaaatta 33468430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 13851788 - 13851747
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  13851788 gacacatataattacactgaattacgttattttctcaaatta 13851747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 338
Target Start/End: Complemental strand, 1532321 - 1532251
Alignment:
Q  268 acatgtgttgtgtctgacaccgacatgaagacacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||||||  ||||||||||| ||| ||   |||||||||||||||||||||| || ||||| ||||||||    
T  1532321 acatgtgtgatgtctgacaccaacacgacaccacatataattacactgaattatgtaattttatcaaatta 1532251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 338
Target Start/End: Complemental strand, 19040405 - 19040363
Alignment:
Q  296 agacacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||||||||||||||||||||||| || ||||| ||||||||    
T  19040405 agacacatataattacactgaattatgtgattttctcaaatta 19040363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 7265600 - 7265641
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||||||||||||||||||||| || ||||| ||||||||    
T  7265600 gacacatataattacactgaattatgtgattttctcaaatta 7265641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 9025501 - 9025542
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||||||||||||||||||||| || ||||| ||||||||    
T  9025501 gacacatataattacactgaattatgtgattttctcaaatta 9025542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 7151463 - 7151423
Alignment:
Q  298 acacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||||||||||||||| ||||| || ||||||||||||||    
T  7151463 acacatataattacacttaattatgtgattttttcaaatta 7151423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 8931609 - 8931649
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatt 337  Q
    |||||||||||||| ||||||||| |||||||| |||||||    
T  8931609 gacacatataattatactgaattatgttattttctcaaatt 8931649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 11591877 - 11591917
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatt 337  Q
    |||||||||||||||||||||||| || ||||| |||||||    
T  11591877 gacacatataattacactgaattatgtgattttctcaaatt 11591917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 13360382 - 13360422
Alignment:
Q  300 acatataattacactgaattaagttattttttcaaattact 340  Q
    ||||||||||||||||||||| || ||||| ||||||||||    
T  13360382 acatataattacactgaattatgtgattttctcaaattact 13360422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 26562741 - 26562701
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatt 337  Q
    |||||||||||||||||||||||| || ||||| |||||||    
T  26562741 gacacatataattacactgaattatgtgattttctcaaatt 26562701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 37023156 - 37023240
Alignment:
Q  34 gtggagagtttcctaaggatgatgagttgagtctttatgatgggtttgtgatcactggtagttgtaatgatgcttatggaaatga 118  Q
    |||| ||||||||  | ||||| || |||| ||| ||||||||||||||||||||||||||||||| ||||||  ||||||||||    
T  37023156 gtggtgagtttccagatgatgaagatttgaatctgtatgatgggtttgtgatcactggtagttgtagtgatgcacatggaaatga 37023240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 331
Target Start/End: Original strand, 22234824 - 22234931
Alignment:
Q  227 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacatga---agacacatataattacactgaattaagt 323  Q
    |||||||||||||| ||||||||   |||| || |||||||||| |||| ||||| |||||||||| ||    |||||||| ||||||||||||||| ||    
T  22234824 aagcacgaacacttctcggattagctgtgtcctggtgtcggacacgtgtcgtgtcagacaccgacacgacaccgacacatagaattacactgaattatgt 22234923  T
Q  324 tatttttt 331  Q
     |||||||    
T  22234924 gatttttt 22234931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 338
Target Start/End: Original strand, 19230297 - 19230357
Alignment:
Q  277 gtgtctgacaccgacatgaagacacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||||||||||||||  | ||||| |||||||||| ||||||| |||||||| ||||||||    
T  19230297 gtgtctgacaccgaca-cacgacacctataattacattgaattatgttattttctcaaatta 19230357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 54580030 - 54580071
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||| |||||||||||||||||| || ||||||||||||||    
T  54580030 gacacttataattacactgaattatgtgattttttcaaatta 54580071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 15029816 - 15029776
Alignment:
Q  298 acacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||||||||||||||||||||| || || |||||||||||    
T  15029816 acacatataattacactgaattatgtgatattttcaaatta 15029776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 24613635 - 24613703
Alignment:
Q  227 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacatga 295  Q
    ||||||| |||||  | |||||| |||||| || ||||| |||| |||| |||||||||||||||||||    
T  24613635 aagcacggacactcctaggattagacgtgtcctggtgtcagacacgtgtcgtgtctgacaccgacatga 24613703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 336
Target Start/End: Original strand, 30982846 - 30982924
Alignment:
Q  261 gtgtcggacatgtgttgtgtctgacaccgacatga---agacacatataattacactgaattaagttattttttcaaat 336  Q
    |||||||||| |||| |||||||||||||||| ||    ||||| ||||||||||||||| || || ||||| ||||||    
T  30982846 gtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattacactgaaatatgtgattttctcaaat 30982924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 36635375 - 36635335
Alignment:
Q  298 acacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||||||||||||||||||||| || ||||| ||||||||    
T  36635375 acacatataattacactgaattatgtgattttctcaaatta 36635335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 46180944 - 46180984
Alignment:
Q  298 acacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||||| |||||||||||||| |||||||| ||||||||    
T  46180944 acacatatgattacactgaattatgttattttctcaaatta 46180984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 338
Target Start/End: Complemental strand, 29508564 - 29508455
Alignment:
Q  227 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacatgaagacacatataattacactgaattaagttat 326  Q
    ||||||| |||||| | |||||| |||||| |  ||||||||| ||||| ||||| |||||| ||||   ||||||||||||||||||||||||  | ||    
T  29508564 aagcacggacacttcttggattagacgtgtcccggtgtcggacgtgtgtcgtgtccgacaccaacatc--gacacatataattacactgaattatatgat 29508467  T
Q  327 tttttcaaatta 338  Q
    ||||||||||||    
T  29508466 tttttcaaatta 29508455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 7928502 - 7928461
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||||||||||||||||||||| || ||||||||||||||    
T  7928502 gacacatataattacactgaattatgtgattttttcaaatta 7928461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 338
Target Start/End: Original strand, 12704613 - 12704705
Alignment:
Q  244 ggattaaacgtgttctagtgtcggacatgtgtt-gtgtctgacaccgacatgaagacacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||| ||||||||| |||||||||||| ||| ||||| |||||||||   | ||||| ||| |||||| ||||||| || ||||||||||||||    
T  12704613 ggattagacgtgttctggtgtcggacatgcgttggtgtccgacaccgac---acgacacctatgattacattgaattatgtcattttttcaaatta 12704705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 16192758 - 16192798
Alignment:
Q  298 acacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  16192758 acacatataattacactgaattatgttattttctcaaatta 16192798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 338
Target Start/End: Original strand, 8039784 - 8039883
Alignment:
Q  242 tcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacatgaa---gacacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||||||| ||||| |  ||||||||||||| |  |||| |||||||||| ||    ||||||||||||||||||||||||  | ||||| ||||||||    
T  8039784 tcggattaagcgtgtcccggtgtcggacatgtctcatgtccgacaccgacacgacaccgacacatataattacactgaattatataattttctcaaatta 8039883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 25093616 - 25093551
Alignment:
Q  227 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgaca 292  Q
    |||||||||||||  || ||||| | ||| |  |||||||||||||||||||||| ||||||||||    
T  25093616 aagcacgaacactcttcagattagaagtgcttcagtgtcggacatgtgttgtgtccgacaccgaca 25093551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 15314884 - 15314924
Alignment:
Q  298 acacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||||||||||||||| ||||| || ||||||||||||||    
T  15314884 acacatataattacactaaattatgtgattttttcaaatta 15314924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 25948895 - 25948935
Alignment:
Q  298 acacatataattacactgaattaagttattttttcaaatta 338  Q
    |||| |||||||||||||||||| || ||||||||||||||    
T  25948895 acacttataattacactgaattatgtgattttttcaaatta 25948935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 338
Target Start/End: Complemental strand, 70392 - 70289
Alignment:
Q  227 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacatgaagacacatataattacactgaattaagttat 326  Q
    ||||||||||||| |||||||||  | ||| || |||||||||| |||| ||||| ||||||||||        | |||||||||||||||||| |||||    
T  70392 aagcacgaacactcatcggattaggcatgtcctggtgtcggacacgtgtcgtgtccgacaccgaca--------cttataattacactgaattatgttat 70301  T
Q  327 tttttcaaatta 338  Q
    ||||||||||||    
T  70300 tttttcaaatta 70289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 43725405 - 43725459
Alignment:
Q  122 atggatatgtgatcttgtcacattgattaagaaattgaactccatgcagacaaaa 176  Q
    |||||||||||| |||||||||||||||||||||||  |||||||||| ||||||    
T  43725405 atggatatgtgaccttgtcacattgattaagaaattagactccatgcacacaaaa 43725459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 338
Target Start/End: Complemental strand, 7438806 - 7438717
Alignment:
Q  252 cgtgttctagtgtcggacatgtgttgtgtctgacaccgacatga---agacacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||| ||||||||| |||||||| |||| ||||||||||||||    ||||| | |||||||| ||||||| || ||||||||||||||    
T  7438806 cgtgtcctagtgtcgcacatgtgtcgtgtttgacaccgacatgacaccgacacttgtaattacattgaattatgtgattttttcaaatta 7438717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 21880266 - 21880201
Alignment:
Q  227 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgaca 292  Q
    ||||||| |||||| ||||||||  ||||| || ||||||||||||||| ||||| ||||||||||    
T  21880266 aagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgaca 21880201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 338
Target Start/End: Complemental strand, 13770810 - 13770702
Alignment:
Q  227 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacatgaagacacatataattacactgaattaagttat 326  Q
    ||||||| |||||  ||||||||  |||||||  |||||||||| |||||||||| ||||| ||||  | ||||| | |||||||||||||||| || ||    
T  13770810 aagcacggacactcttcggattaggcgtgttccggtgtcggacacgtgttgtgtccgacac-gaca--acgacacttgtaattacactgaattatgtaat 13770714  T
Q  327 tttttcaaatta 338  Q
    ||||| ||||||    
T  13770713 ttttttaaatta 13770702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 17307944 - 17307904
Alignment:
Q  298 acacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  17307944 acacatataattacactgaattatgttattttctcaaatta 17307904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 338
Target Start/End: Complemental strand, 20549870 - 20549802
Alignment:
Q  262 tgtcggacatgtgttgtgtctgacaccgacatgaagacacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||||||||||||||||| ||||||||||        |||||||||||||||||||| || ||||| ||||||||    
T  20549870 tgtcggacatgtgttgtgtccgacaccgaca--------catataattacactgaattacgtgattttctcaaatta 20549802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 5835299 - 5835261
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaa 335  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  5835299 gacacatataattacactgaattatgttattttctcaaa 5835261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 338
Target Start/End: Original strand, 6630880 - 6630960
Alignment:
Q  261 gtgtcggacatgtgttgtgtctgacaccgacatgaa---gacacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||||| || |||||||||| |||||| ||| ||    ||||||||||||||||||||||||||| | ||| ||||||||    
T  6630880 gtgtcgggcacgtgttgtgtccgacaccaacacgacatcgacacatataattacactgaattaagtgactttctcaaatta 6630960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 338
Target Start/End: Original strand, 11665408 - 11665488
Alignment:
Q  261 gtgtcggacatgtgttgtgtctgacaccgacatgaa---gacacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||||||| |||| ||||  |||||||||||||    ||||| |||||||| ||||||||| || ||||||||||||||    
T  11665408 gtgtcggacacgtgtcgtgttcgacaccgacatgacatcgacacttataattagactgaattatgtgattttttcaaatta 11665488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 338
Target Start/End: Complemental strand, 32308211 - 32308131
Alignment:
Q  261 gtgtcggacatgtgttgtgtctgacaccgacatgaa---gacacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||||||||||||| |||||  ||||||||| ||    |||||||| ||||||||||||||| || ||||| ||||||||    
T  32308211 gtgtcggacatgtgtcgtgtccaacaccgacacgacactgacacatacaattacactgaattatgtgattttctcaaatta 32308131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 598322 - 598257
Alignment:
Q  227 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgaca 292  Q
    ||||||| |||||| ||||||||  ||||| |  |||||||||| |||| ||||||||||||||||    
T  598322 aagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgaca 598257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 7328698 - 7328739
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||||||||||||||| ||||| |||||||| ||||||||    
T  7328698 gacacatataattacactaaattatgttattttctcaaatta 7328739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 18013081 - 18013122
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||||||||||||||||||||| || ||||||| ||||||    
T  18013081 gacacatataattacactgaattatgtaatttttttaaatta 18013122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 338
Target Start/End: Original strand, 9681 - 9795
Alignment:
Q  227 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacatgaa---gacacatataattacactgaattaagt 323  Q
    ||||||| |||||  |||||||| |||||| |   |||| |||| |||| |||||||||||| ||| ||    |||||||||||||||||||||||||||    
T  9681 aagcacggacactcctcggattatacgtgtcccgatgtcagacaagtgtcgtgtctgacaccaacacgacaccgacacatataattacactgaattaagt 9780  T
Q  324 tattttttcaaatta 338  Q
     ||||| ||||||||    
T  9781 gattttctcaaatta 9795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 338
Target Start/End: Complemental strand, 9828169 - 9828055
Alignment:
Q  227 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacatgaa---gacacatataattacactgaattaagt 323  Q
    ||||||| |||||  |||||||| |||||| |  |||||||||| |||| ||||||||||| |||| ||    |||||||| ||||||||||||||| ||    
T  9828169 aagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaattacactgaattatgt 9828070  T
Q  324 tattttttcaaatta 338  Q
     ||||| ||||||||    
T  9828069 gattttatcaaatta 9828055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 338
Target Start/End: Original strand, 26238086 - 26238160
Alignment:
Q  263 gtcggacatgtgttgtgtctgacaccgacatgaagacacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||||| |||||||||| ||||||||||    |||||||||| ||||||||||||| |||||||| ||||||||    
T  26238086 gtcggacacgtgttgtgtccgacaccgacacactgacacatata-ttacactgaattatgttattttctcaaatta 26238160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 292
Target Start/End: Original strand, 43492473 - 43492504
Alignment:
Q  261 gtgtcggacatgtgttgtgtctgacaccgaca 292  Q
    ||||||||||||||||||||||||||||||||    
T  43492473 gtgtcggacatgtgttgtgtctgacaccgaca 43492504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 338
Target Start/End: Original strand, 5898207 - 5898314
Alignment:
Q  223 tataaagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacatgaagacacatataattacactgaattaag 322  Q
    ||||||||||| |||||  |||||||| |||||| |  |||| ||||| |||| ||||||||||||        ||| |||||||||||||||||||| |    
T  5898207 tataaagcacggacactcctcggattagacgtgtcccggtgttggacacgtgtcgtgtctgacacc--------gacgcatataattacactgaattatg 5898298  T
Q  323 ttattttttcaaatta 338  Q
    | ||||||||| ||||    
T  5898299 tgattttttcagatta 5898314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 398772 - 398813
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||| |||||||||||||||||| || ||||||||||||||    
T  398772 gacacctataattacactgaattatgtgattttttcaaatta 398813  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 1486716 - 1486757
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||| |||||||||||||||||| || ||||||||||||||    
T  1486716 gacacttataattacactgaattatgtgattttttcaaatta 1486757  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 1864887 - 1864928
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||||||||||||||||||||| || ||||| ||||||||    
T  1864887 gacacatataattacactgaattatgtgattttctcaaatta 1864928  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 7918218 - 7918259
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||||||||||||||||||||| || ||||| ||||||||    
T  7918218 gacacatataattacactgaattatgtgattttctcaaatta 7918259  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 17754363 - 17754322
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||||||| ||||||||||||| || ||||||||||||||    
T  17754363 gacacatatagttacactgaattatgtaattttttcaaatta 17754322  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 25361938 - 25361897
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||||||||||||||||||||| || ||||| ||||||||    
T  25361938 gacacatataattacactgaattatgtgattttctcaaatta 25361897  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 338
Target Start/End: Original strand, 31672910 - 31672943
Alignment:
Q  305 taattacactgaattaagttattttttcaaatta 338  Q
    ||||||||||||||||||| ||||||||||||||    
T  31672910 taattacactgaattaagtgattttttcaaatta 31672943  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 34712390 - 34712431
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||||||||||||||| ||||| |||||||| ||||||||    
T  34712390 gacacatataattacactaaattatgttattttctcaaatta 34712431  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 44482282 - 44482241
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||||||||||||||||||||| || ||||| ||||||||    
T  44482282 gacacatataattacactgaattatgtgattttctcaaatta 44482241  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 21530778 - 21530738
Alignment:
Q  252 cgtgttctagtgtcggacatgtgttgtgtctgacaccgaca 292  Q
    ||||| |||||||||||||||||| ||||| ||||||||||    
T  21530778 cgtgtcctagtgtcggacatgtgtcgtgtccgacaccgaca 21530738  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 25098563 - 25098603
Alignment:
Q  298 acacatataattacactgaattaagttattttttcaaatta 338  Q
    ||||||||||||||||||||||| || ||||| ||||||||    
T  25098563 acacatataattacactgaattatgtgattttctcaaatta 25098603  T

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Target: scaffold0123 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 44467 - 44572
Alignment:
Q  235 acacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacatgaa---gacacatataattacactgaattaagttatttttt 331  Q
    |||||| || |||||| | ||| | ||||||||||| ||||||||||  ||||||||| ||    |||||||||||||||||||||||| || ||||| |    
T  44467 acacttctcagattaaccatgtcccagtgtcggacacgtgttgtgtccaacaccgacacgataccgacacatataattacactgaattatgtgattttct 44566  T
Q  332 caaatt 337  Q
    ||||||    
T  44567 caaatt 44572  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 4611583 - 4611545
Alignment:
Q  300 acatataattacactgaattaagttattttttcaaatta 338  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  4611583 acatataattacactgaattatgttattttctcaaatta 4611545  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 11927093 - 11927134
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||||||||||||||||||||| || ||||| ||||||||    
T  11927093 gacacatataattacactgaattatgtgattttatcaaatta 11927134  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 34897137 - 34897096
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||||||||||||||||||||| || ||||| ||||||||    
T  34897137 gacacatataattacactgaattatgtgattttctcaaatta 34897096  T

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Target: scaffold1528 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 1087 - 1046
Alignment:
Q  297 gacacatataattacactgaattaagttattttttcaaatta 338  Q
    |||||||||| ||||||||||||| || ||||||||||||||    
T  1087 gacacatatagttacactgaattatgtaattttttcaaatta 1046  T

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Target: scaffold0066 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 338
Target Start/End: Original strand, 33378 - 33411
Alignment:
Q  305 taattacactgaattaagttattttttcaaatta 338  Q
    |||||||||||||||| |||||||||||||||||    
T  33378 taattacactgaattatgttattttttcaaatta 33411  T

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Target: scaffold0697 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 1733 - 1693
Alignment:
Q  252 cgtgttctagtgtcggacatgtgttgtgtctgacaccgaca 292  Q
    ||||| |||||||||||||||||| ||||| ||||||||||    
T  1733 cgtgtcctagtgtcggacatgtgtcgtgtccgacaccgaca 1693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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