View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21006_high_9 (Length: 318)

Name: NF21006_high_9
Description: NF21006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21006_high_9
NF21006_high_9
[»] chr4 (16 HSPs)
chr4 (24-288)||(1731097-1731360)
chr4 (33-175)||(2073667-2073816)
chr4 (24-85)||(21075833-21075894)
chr4 (24-85)||(2225003-2225064)
chr4 (24-85)||(2721279-2721340)
chr4 (33-86)||(7250563-7250616)
chr4 (24-85)||(12185782-12185843)
chr4 (24-85)||(12187774-12187835)
chr4 (24-85)||(14576795-14576856)
chr4 (24-85)||(29405919-29405980)
chr4 (24-85)||(1758026-1758087)
chr4 (24-85)||(11034699-11034760)
chr4 (24-85)||(21245843-21245904)
chr4 (24-85)||(22829741-22829802)
chr4 (24-85)||(38000595-38000656)
chr4 (24-85)||(45097565-45097626)
[»] chr7 (11 HSPs)
chr7 (24-175)||(43224227-43224379)
chr7 (33-85)||(46783076-46783128)
chr7 (33-85)||(33067530-33067582)
chr7 (24-84)||(43702467-43702527)
chr7 (24-85)||(1876096-1876157)
chr7 (24-85)||(10066312-10066373)
chr7 (33-70)||(30738696-30738733)
chr7 (24-85)||(38469972-38470033)
chr7 (24-84)||(19805039-19805099)
chr7 (139-175)||(31454801-31454837)
chr7 (33-85)||(36072605-36072657)
[»] chr8 (8 HSPs)
chr8 (24-175)||(2472334-2472492)
chr8 (33-175)||(19643576-19643725)
chr8 (24-86)||(25500139-25500201)
chr8 (24-85)||(1667250-1667311)
chr8 (34-84)||(15961735-15961785)
chr8 (24-85)||(1376179-1376240)
chr8 (24-84)||(7580052-7580112)
chr8 (34-86)||(25419260-25419312)
[»] scaffold0164 (2 HSPs)
scaffold0164 (28-85)||(7153-7210)
scaffold0164 (28-85)||(15034-15091)
[»] scaffold0005 (1 HSPs)
scaffold0005 (24-85)||(240519-240580)
[»] chr6 (6 HSPs)
chr6 (24-85)||(20691637-20691698)
chr6 (33-85)||(6938045-6938097)
chr6 (33-85)||(1329619-1329671)
chr6 (33-85)||(6337234-6337286)
chr6 (104-175)||(6937960-6938032)
chr6 (33-85)||(31784030-31784082)
[»] chr5 (6 HSPs)
chr5 (24-85)||(36470503-36470564)
chr5 (24-85)||(41616578-41616639)
chr5 (33-85)||(15719243-15719295)
chr5 (107-175)||(6224974-6225043)
chr5 (24-85)||(35935300-35935361)
chr5 (24-84)||(4901993-4902053)
[»] chr1 (16 HSPs)
chr1 (33-78)||(7842566-7842611)
chr1 (24-85)||(35978563-35978624)
chr1 (24-85)||(48964427-48964488)
chr1 (33-81)||(32835573-32835621)
chr1 (33-85)||(38491412-38491464)
chr1 (24-85)||(19506376-19506437)
chr1 (24-85)||(25059094-25059155)
chr1 (28-85)||(40094567-40094624)
chr1 (24-85)||(42069171-42069232)
chr1 (24-85)||(44327983-44328044)
chr1 (104-175)||(2978315-2978387)
chr1 (33-85)||(2978412-2978464)
chr1 (108-175)||(21260878-21260946)
chr1 (33-85)||(27783508-27783560)
chr1 (104-175)||(28220864-28220936)
chr1 (33-85)||(31646361-31646413)
[»] chr2 (4 HSPs)
chr2 (34-85)||(30241419-30241470)
chr2 (24-78)||(31440689-31440743)
chr2 (24-85)||(668024-668085)
chr2 (33-85)||(44070467-44070519)
[»] chr3 (3 HSPs)
chr3 (24-85)||(19618674-19618735)
chr3 (24-85)||(19873082-19873143)
chr3 (33-85)||(39352450-39352502)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 24 - 288
Target Start/End: Original strand, 1731097 - 1731360
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttgtttacgaagatacaagcgcgggtaattcttacaaatgc 123  Q
    |||||||| |||||||||||||||||||||||||||||||  ||||||||||||| |||||||| |||||||||| ||||| | ||||| ||||||||||    
T  1731097 atggatgcaggtatgggcacttaggtacccatagagtatggggaagggtactaaatttgttgttcacgaagatacgagcgcagataatttttacaaatgc 1731196  T
Q  124 aggtatggagatggtattgtattaccctactcattagatacccattgccatcgatatggagagaggatactccccaatgatggaacgagtacggggatag 223  Q
    ||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1731197 aggtatggagatggtattgtagtacc-tactcatttgatacccattgccatcgatatggagagaggatactccccaatgatggaacgagtacggggatag 1731295  T
Q  224 agagaattttcacgaggacaagagcgaagaatgataaagtttactctgctcttgttgcgtcttat 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1731296 agagaattttcacgaggacaagagcgaagaatgataaagtttactctgctattgttgcgtcttat 1731360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 175
Target Start/End: Original strand, 2073667 - 2073816
Alignment:
Q  33 ggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttgtttacgaagatacaagcgcg------ggtaattcttacaaatgcagg 126  Q
    |||| ||||||||| |||||||||| |||||  |||||| |||||| ||||||   |||| ||||||||| ||      ||||||| ||| |||||| ||    
T  2073667 ggtacgggcacttacgtacccatagggtatggggaagggcactaaagttgttgcccacgaggatacaagcacgaatacgggtaatttttataaatgcggg 2073766  T
Q  127 tatggagatg-gtattgtattaccctactcattagatacccattgccatc 175  Q
    |||||||||| | |||||| ||||||| ||||| |||| |||||||||||    
T  2073767 tatggagatgagcattgtagtaccctattcattggataaccattgccatc 2073816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 21075894 - 21075833
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||||||| ||||||||||||||||||||||||| |||||  |||||| ||||||| |||||    
T  21075894 atggatgcgggtatgggcacttaggtacccatagggtatggggaaggggactaaaaatgttg 21075833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 2225003 - 2225064
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| |||||| |||||||||||||||| | ||||| ||||||| |||||||||||||    
T  2225003 atgggtgcgggtatgagcacttaggtacccatcgggtatggagaaggggactaaaattgttg 2225064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 2721279 - 2721340
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||||||| |||||||||||| |||||||||||| |||||  |||||| |||||| ||||||    
T  2721279 atggatgcgggtatgggcactgaggtacccatagggtatggggaaggggactaaagttgttg 2721340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 7250563 - 7250616
Alignment:
Q  33 ggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttgt 86  Q
    |||||||||||||||||||||||||| ||||  |||||| |||||| |||||||    
T  7250563 ggtatgggcacttaggtacccatagaatatggggaagggcactaaagttgttgt 7250616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 12185843 - 12185782
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||||||| |||||||||||| |||||||||||| |||||  |||||| |||||| ||||||    
T  12185843 atggatgcgggtatgggcactgaggtacccatagggtatggggaaggggactaaagttgttg 12185782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 12187835 - 12187774
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||||||| |||||||||||| |||||||||||| |||||  |||||| |||||| ||||||    
T  12187835 atggatgcgggtatgggcactgaggtacccatagggtatggggaaggggactaaagttgttg 12187774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 14576856 - 14576795
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||||||| |||||||||||| ||||||||||||  ||||  |||||| |||||||||||||    
T  14576856 atggatgcgggtatgggcactgaggtacccataggatatggggaaggggactaaaattgttg 14576795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 29405919 - 29405980
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| ||||||||||||||||| |||||||||||||  |||||| |||||| ||||||    
T  29405919 atgggtgcaggtatgggcacttaggtgcccatagagtatggggaagggcactaaagttgttg 29405980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 1758026 - 1758087
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| ||||||||||||||||||||||||| |||||  ||||||  ||||| ||||||    
T  1758026 atgggtgcgggtatgggcacttaggtacccatagggtatggggaagggccctaaagttgttg 1758087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 11034760 - 11034699
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| ||||||||||||||||| ||||||| |||||  |||||| |||||| ||||||    
T  11034760 atgggtgcgggtatgggcacttaggtgcccatagggtatggggaagggcactaaagttgttg 11034699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 21245904 - 21245843
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||||||| | ||||||||||||| ||||||||| ||||| ||||||| |||| | ||||||    
T  21245904 atggatgcggatatgggcacttagatacccatagggtatggagaaggggactacagttgttg 21245843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 22829802 - 22829741
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| ||||||||||||||||| ||||||| |||||  |||||| |||||| ||||||    
T  22829802 atgggtgcgggtatgggcacttaggtgcccatagggtatggggaagggcactaaagttgttg 22829741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 38000656 - 38000595
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||||||| ||||||||||||||||||||||||  |||||  |||||  |||||| ||||||    
T  38000656 atggatgcgggtatgggcacttaggtacccataaggtatggggaaggagactaaagttgttg 38000595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 45097626 - 45097565
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| ||||| ||||||||||| ||||||| ||||| ||||||| |||||| ||||||    
T  45097626 atgggtgcgggtataggcacttaggtgcccatagggtatggagaagggcactaaagttgttg 45097565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 43224379 - 43224227
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttgtttacgaagatacaagcgcgggtaattcttacaaatgc 123  Q
    |||| ||| ||||||||||||||| ||||||||| |||||  |||||| |||||| |||||||  |||| | ||||  | ||||||||| ||| ||||||    
T  43224379 atgggtgcaggtatgggcacttagatacccatagggtatggggaagggcactaaagttgttgtccacgagggtacagacacgggtaatttttaaaaatgc 43224280  T
Q  124 aggtatggagat-ggtattgtattaccctactcattagatacccattgccatc 175  Q
     ||||||| ||| || |||||| |||||| | |||| | ||| ||||||||||    
T  43224279 gggtatggggatgggcattgtagtacccttcccattgggtactcattgccatc 43224227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 46783128 - 46783076
Alignment:
Q  33 ggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    ||||||||||||||||||||||||| ||||| ||||||| |||||| ||||||    
T  46783128 ggtatgggcacttaggtacccatagggtatggagaaggggactaaagttgttg 46783076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 33067530 - 33067582
Alignment:
Q  33 ggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||||||||||||||||||||||||||||||  |||||  |||||| ||||||    
T  33067530 ggtatgggcacttaggtacccatagagtatggggaaggacactaaagttgttg 33067582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 43702467 - 43702527
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgtt 84  Q
    |||||||| ||||||||||||||||||||||||| |||||  |||| | |||||| |||||    
T  43702467 atggatgcgggtatgggcacttaggtacccatagggtatggggaagagcactaaagttgtt 43702527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 1876096 - 1876157
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| ||||||||||||||||| ||||||| |||||  |||||| |||||| ||||||    
T  1876096 atgggtgcgggtatgggcacttaggtgcccatagggtatggggaagggcactaaagttgttg 1876157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 10066312 - 10066373
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| |||||||||||||||||||| |||| |||||  |||||| |||||| ||||||    
T  10066312 atgggtgcgggtatgggcacttaggtacctatagggtatggggaaggggactaaagttgttg 10066373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 30738696 - 30738733
Alignment:
Q  33 ggtatgggcacttaggtacccatagagtatgaagaagg 70  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  30738696 ggtatgggcacttaggtacccatagcgtatggagaagg 30738733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 38469972 - 38470033
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| |||||||||||||| || ||||| | |||||  ||||||||||||||||||||    
T  38469972 atgggtgcgggtatgggcacttaagtgcccattgggtatggggaagggtactaaaattgttg 38470033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 19805099 - 19805039
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgtt 84  Q
    |||| ||| |||||| |||||||||||||||||| |||||  |||||| |||||| |||||    
T  19805099 atgggtgcgggtatgagcacttaggtacccatagggtatggggaaggggactaaagttgtt 19805039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 31454837 - 31454801
Alignment:
Q  139 attgtattaccctactcattagatacccattgccatc 175  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  31454837 attgtagtaccctactcattggatacccattgccatc 31454801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 36072657 - 36072605
Alignment:
Q  33 ggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    ||||||||||||||||| ||||||| |||||  |||||| |||||| ||||||    
T  36072657 ggtatgggcacttaggtgcccatagggtatggggaagggcactaaagttgttg 36072605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 2472334 - 2472492
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttgtttacgaagatacaagcgcgggta------attcttac 117  Q
    |||||||| |||||||||||||| |||||||||| |||||  ||| || |||||| |||||||  |||| | |||  || ||| ||      ||| ||||    
T  2472334 atggatgcgggtatgggcacttatgtacccatagggtatggggaatggcactaaagttgttgtccacgagggtacgggcacggatatggataatttttac 2472433  T
Q  118 aaatgcaggtatggagatggt-attgtattaccctactcattagatacccattgccatc 175  Q
    |||||| |||||||||||||  |||||| |||||||| |||| ||||||||||||||||    
T  2472434 aaatgcgggtatggagatgggcattgtagtaccctacccattggatacccattgccatc 2472492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 175
Target Start/End: Original strand, 19643576 - 19643725
Alignment:
Q  33 ggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttgtttacgaagatacaagcgcgggta------attcttacaaatgcagg 126  Q
    ||||||||||| ||| ||||||||| |||||| |||||| |||||| ||||||   |||||| |||  || ||||||      ||| |||||||||||||    
T  19643576 ggtatgggcacctagatacccatagggtatgaggaagggcactaaagttgttgcccacgaaggtacgggcacgggtacgggtaatttttacaaatgcagg 19643675  T
Q  127 tatggagatg-gtattgtattaccctactcattagatacccattgccatc 175  Q
    |||||||||| | ||| || |||||||| |||| | |||||||| |||||    
T  19643676 tatggagatgagcattatagtaccctacccattgggtacccattaccatc 19643725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 25500201 - 25500139
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttgt 86  Q
    |||| ||| ||||||||||||||||||||||||  |||||  ||||||||||||| |||||||    
T  25500201 atgggtgcgggtatgggcacttaggtacccataaggtatggggaagggtactaaagttgttgt 25500139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 1667311 - 1667250
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| ||||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  1667311 atgggtgcgggtatgggcacttaggtacccatagggtatggggaagggcactaaagttgttg 1667250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 15961735 - 15961785
Alignment:
Q  34 gtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgtt 84  Q
    |||||||||| ||||| |||||||| ||||| ||||||||||||| |||||    
T  15961735 gtatgggcacgtaggtgcccatagaatatgaggaagggtactaaagttgtt 15961785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 1376240 - 1376179
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| ||||||||||||||||||||||||| |||| | ||| || |||||| ||||||    
T  1376240 atgggtgcgggtatgggcacttaggtacccatagggtataaggaatgggactaaagttgttg 1376179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 7580112 - 7580052
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgtt 84  Q
    |||| ||| ||||||||||||||||| ||||||| |||||  |||||| |||||| |||||    
T  7580112 atgggtgcgggtatgggcacttaggtgcccatagggtatggggaagggcactaaagttgtt 7580052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 25419312 - 25419260
Alignment:
Q  34 gtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttgt 86  Q
    ||||||||||||| |||||||||| |||||   |||||||||||| |||||||    
T  25419312 gtatgggcacttaagtacccatagggtatgggaaagggtactaaagttgttgt 25419260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 7153 - 7210
Alignment:
Q  28 atgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||||||||||||||||||||| ||| |||||| |||||| |||||| ||||||    
T  7153 atgcaggtatgggcacttaggtacccttagggtatgaggaaggggactaaagttgttg 7210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 15034 - 15091
Alignment:
Q  28 atgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||||||||||||||||||||| ||| |||||| |||||| |||||| ||||||    
T  15034 atgcaggtatgggcacttaggtacccttagggtatgaggaaggggactaaagttgttg 15091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 240519 - 240580
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||||||| |||||||||||| ||||||||||||  ||||  |||||| |||||||||||||    
T  240519 atggatgcgggtatgggcactgaggtacccataggatatggggaaggggactaaaattgttg 240580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 20691637 - 20691698
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| ||||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  20691637 atgggtgcgggtatgggcacttaggtacccatagggtatggggaaggggactaaagttgttg 20691698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 6938097 - 6938045
Alignment:
Q  33 ggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    ||||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  6938097 ggtatgggcacttaggtacccatagggtatggggaagggcactaaagttgttg 6938045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 1329619 - 1329671
Alignment:
Q  33 ggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||||||||||||||||| |||||| |||||  |||||| |||||| ||||||    
T  1329619 ggtatgggcacttaggtatccatagggtatggggaaggggactaaagttgttg 1329671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 6337286 - 6337234
Alignment:
Q  33 ggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    ||||||||||||||||||||||||| |||||  ||| || |||||| ||||||    
T  6337286 ggtatgggcacttaggtacccatagggtatggggaatggcactaaagttgttg 6337234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 6938032 - 6937960
Alignment:
Q  104 cgggtaattcttacaaatgcaggtatggagatggt-attgtattaccctactcattagatacccattgccatc 175  Q
    ||||||||| |||||||||| ||||||| |||||  |||||| |||||||| |||  | ||||||||||||||    
T  6938032 cgggtaatttttacaaatgcgggtatggggatgggcattgtagtaccctacccatagggtacccattgccatc 6937960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 31784030 - 31784082
Alignment:
Q  33 ggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||||| |||||||||||||||||| |||||  |||||| |||||| ||||||    
T  31784030 ggtatgagcacttaggtacccatagggtatggggaaggggactaaagttgttg 31784082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 36470503 - 36470564
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| ||||||| |||||||||||||||||||||||  |||||| |||||| ||||||    
T  36470503 atgggtgcgggtatggacacttaggtacccatagagtatggggaagggcactaaagttgttg 36470564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 41616639 - 41616578
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| |||||||||||||| |||||||||| ||||| ||||||| |||||| ||||||    
T  41616639 atgggtgcgggtatgggcacttaagtacccatagggtatggagaaggggactaaagttgttg 41616578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 15719243 - 15719295
Alignment:
Q  33 ggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||||||||||||| |||||||||| |||||| |||||| |||||| ||||||    
T  15719243 ggtatgggcacttaagtacccatagggtatgaggaaggggactaaagttgttg 15719295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 6224974 - 6225043
Alignment:
Q  107 gtaattcttacaaatgcaggtatggagatggt-attgtattaccctactcattagatacccattgccatc 175  Q
    |||||| ||| |||||| ||||||| |||||  |||||| |||||||| |||||||||||||||| ||||    
T  6224974 gtaatttttaaaaatgcgggtatggggatgggcattgtagtaccctacccattagatacccattgtcatc 6225043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 35935361 - 35935300
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| ||||||||||||||||| ||| ||| ||||| ||||||| |||||| ||||||    
T  35935361 atgggtgcgggtatgggcacttaggtgcccgtagggtatggagaagggcactaaagttgttg 35935300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 4901993 - 4902053
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgtt 84  Q
    |||| ||| ||||||||||||||||| ||||||| |||||  |||||| |||||| |||||    
T  4901993 atgggtgcgggtatgggcacttaggtgcccatagggtatggggaagggcactaaagttgtt 4902053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 7842611 - 7842566
Alignment:
Q  33 ggtatgggcacttaggtacccatagagtatgaagaagggtactaaa 78  Q
    ||||||||||||||| ||||||||||||||| ||||||| ||||||    
T  7842611 ggtatgggcacttagatacccatagagtatggagaagggcactaaa 7842566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 35978563 - 35978624
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| ||||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  35978563 atgggtgcgggtatgggcacttaggtacccatagggtatggggaaggggactaaagttgttg 35978624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 48964427 - 48964488
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| |||||||||||| ||||||||||||||||||  |||||| |||||| ||||||    
T  48964427 atgggtgcgggtatgggcactgaggtacccatagagtatggggaaggggactaaagttgttg 48964488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 32835573 - 32835621
Alignment:
Q  33 ggtatgggcacttaggtacccatagagtatgaagaagggtactaaaatt 81  Q
    |||||| ||||||||||||||||| ||||||| |||||| |||||||||    
T  32835573 ggtatgagcacttaggtacccataaagtatgaggaagggcactaaaatt 32835621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 38491464 - 38491412
Alignment:
Q  33 ggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    ||||||||||||||| ||||||||| |||||  ||||||||||||| ||||||    
T  38491464 ggtatgggcacttagatacccatagggtatggggaagggtactaaagttgttg 38491412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 19506437 - 19506376
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| ||||||||||||||| ||||||||| |||||  |||||| |||||| ||||||    
T  19506437 atgggtgcgggtatgggcacttagatacccatagggtatggggaagggcactaaagttgttg 19506376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 25059155 - 25059094
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| ||||||||||||||| ||||||||| |||||  |||||| |||||| ||||||    
T  25059155 atgggtgcgggtatgggcacttagatacccatagggtatggggaagggcactaaagttgttg 25059094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 40094567 - 40094624
Alignment:
Q  28 atgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||||||||||||||||| ||||||| |||||  |||||| |||||| ||||||    
T  40094567 atgcgggtatgggcacttaggtgcccatagggtatggggaagggcactaaagttgttg 40094624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 42069171 - 42069232
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| ||||||||||||||| ||||||||| |||||  |||||| |||||| ||||||    
T  42069171 atgggtgcgggtatgggcacttagatacccatagggtatggggaaggggactaaagttgttg 42069232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 44327983 - 44328044
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| ||||||| ||||||||||||||||| |||||  |||||| |||||| ||||||    
T  44327983 atgggtgcgggtatggacacttaggtacccatagggtatggggaaggggactaaagttgttg 44328044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 2978387 - 2978315
Alignment:
Q  104 cgggtaattcttacaaatgcaggtatggagatggt-attgtattaccctactcattagatacccattgccatc 175  Q
    ||||||||| ||| |||||| ||||||| |||||  |||||| |||||||| |||| | ||||||||||||||    
T  2978387 cgggtaatttttaaaaatgcgggtatggggatgggcattgtagtaccctacccattgggtacccattgccatc 2978315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 2978464 - 2978412
Alignment:
Q  33 ggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    ||||||||||||||| ||||||||| |||||  |||||| |||||| ||||||    
T  2978464 ggtatgggcacttagatacccatagggtatggggaagggcactaaagttgttg 2978412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 21260878 - 21260946
Alignment:
Q  108 taattcttacaaatgcaggtatggagatggt-attgtattaccctactcattagatacccattgccatc 175  Q
    ||||| ||| |||||| ||||||| |||||  |||||| |||||||| |||||| ||||||||||||||    
T  21260878 taatttttaaaaatgcgggtatggggatgggcattgtagtaccctacccattaggtacccattgccatc 21260946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 27783560 - 27783508
Alignment:
Q  33 ggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||||||||||| ||||||||||||| ||||  |||||| |||||| ||||||    
T  27783560 ggtatgggcactgaggtacccatagactatggggaaggggactaaagttgttg 27783508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 28220936 - 28220864
Alignment:
Q  104 cgggtaattcttacaaatgcaggtatggagatggt-attgtattaccctactcattagatacccattgccatc 175  Q
    ||||||||| ||| |||||| ||||||| |||||  |||||| |||||||| |||| | ||||||||||||||    
T  28220936 cgggtaatttttaaaaatgcgggtatggggatgggcattgtagtaccctacccattgggtacccattgccatc 28220864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 31646361 - 31646413
Alignment:
Q  33 ggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    ||||||||||||||||| ||||||| |||||  |||||| |||||| ||||||    
T  31646361 ggtatgggcacttaggtgcccatagggtatggggaagggcactaaagttgttg 31646413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 30241470 - 30241419
Alignment:
Q  34 gtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||||||||||||||||||||||| ||||| ||||||  |||||| ||||||    
T  30241470 gtatgggcacttaggtacccatagggtatggagaaggagactaaagttgttg 30241419  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 31440689 - 31440743
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaa 78  Q
    |||| ||| ||||||||||||||||||| ||||| ||||| ||||||| ||||||    
T  31440689 atgggtgcgggtatgggcacttaggtacacatagggtatggagaaggggactaaa 31440743  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 668024 - 668085
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| |||||||||||||||||||||||||  ||||  |||||| |||||| ||||||    
T  668024 atgggtgcgggtatgggcacttaggtacccataggatatggggaagggcactaaagttgttg 668085  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 44070467 - 44070519
Alignment:
Q  33 ggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    ||||||||||||||||||||||||| |||||   ||||| |||||| ||||||    
T  44070467 ggtatgggcacttaggtacccatagggtatgggaaaggggactaaagttgttg 44070519  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 19618735 - 19618674
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| |||||||||||||||||| |||||| |||||  |||||| |||||| ||||||    
T  19618735 atgggtgcgggtatgggcacttaggtatccatagggtatggggaagggaactaaagttgttg 19618674  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 19873143 - 19873082
Alignment:
Q  24 atggatgctggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    |||| ||| |||||||||||||||||||||||| ||||||  || ||| |||||| ||||||    
T  19873143 atgggtgcgggtatgggcacttaggtacccataaagtatggggaggggcactaaagttgttg 19873082  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 39352502 - 39352450
Alignment:
Q  33 ggtatgggcacttaggtacccatagagtatgaagaagggtactaaaattgttg 85  Q
    ||||||||||||||||||| ||||| |||||  |||||| |||||| ||||||    
T  39352502 ggtatgggcacttaggtactcatagggtatggggaaggggactaaagttgttg 39352450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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