View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21007_low_1 (Length: 865)
Name: NF21007_low_1
Description: NF21007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21007_low_1 |
 | |
|
| [»] scaffold0024 (3 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 26)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 151 - 661
Target Start/End: Complemental strand, 2974237 - 2973727
Alignment:
| Q |
151 |
caagtcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactcagttgcactcggtaaatgtattatctgttcgtcgatc |
250 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||| |
|
|
| T |
2974237 |
caagtcatgtaaacattcacttttagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtattatttgttcatcgatc |
2974138 |
T |
|
| Q |
251 |
gcttctctactcggtcgactttcaataggatgtttcaaatgaaatatcctagtcagatcagtgaagtgcattatactaatatctttattatcaaaactca |
350 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| || |||||||||| || |
|
|
| T |
2974137 |
tgctctctactcggcctactttcaataggatgtttcaaatgaaatatcctaatcagatcattgaagtgcattatactaatatcattgttatcaaaaccca |
2974038 |
T |
|
| Q |
351 |
attttgatttattgaaaccttgaaaataatcaaaagtgagttcaagaaaagaa-ggaacactagcatttgtagaactgaatgaaagactgtaaatttttt |
449 |
Q |
| |
|
|||||| ||||||||||| |||||| ||| ||| |||||||| |||||||||| ||| || ||| || | | | | ||||||| |||||||||||||| |
|
|
| T |
2974037 |
attttggtttattgaaacattgaaagtaagcaatagtgagtttaagaaaagaatggatca-tagtgttaggaacagtcaatgaaatactgtaaatttttt |
2973939 |
T |
|
| Q |
450 |
caataacaaaatagggaagctgattttcaagtaagaataaatctgatgttatatcattttctaaccaaggttttaagagatcaccttcacaacaggatct |
549 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| ||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2973938 |
caataacgaaaaagggaagctgattttcaagtaacaataaatctgatgatatatcattatataaccaaggttttaagagatcaccttcacaacaggatct |
2973839 |
T |
|
| Q |
550 |
caaaaaatgttcaattataaaaccggaatccattaaaattaacttaacaagttcattatgagaaaatggtagggtttcggaataacagcctttgaaatca |
649 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
2973838 |
caataaatgttcaattataaaaccggaatccattaaaattaacttaacaagttcaatatgagaaaatgatagggttttggaataacagcctttgaaatca |
2973739 |
T |
|
| Q |
650 |
gataagatagat |
661 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2973738 |
gataagatagat |
2973727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 151 - 848
Target Start/End: Original strand, 2658839 - 2659551
Alignment:
| Q |
151 |
caagtcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactcagttgcactcggtaaatgtattatctgttcgtcgatc |
250 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||| || |
|
|
| T |
2658839 |
caagtcaagtaaacacttacttttagtgctcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtatcatccgttcgtcggtc |
2658938 |
T |
|
| Q |
251 |
gcttctctactcggtcgactttcaataggatgtttcaaatgaaatatcctagtcagatcagtgaagtgcattatactaatatctttattatcaaaactca |
350 |
Q |
| |
|
|| | ||||||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
2658939 |
gcgttattactcggtcgaatttcaataggaagttgcaaatgaaatatcctaatcagatcagtgaagtgcattatactaatatcaccattatcaaaaaaca |
2659038 |
T |
|
| Q |
351 |
attttgatttattgaaaccttgaaaataatcaaaagtgagttcaagaaaa-----ga----------aggaacactagcatttgtagaactgaatgaaag |
435 |
Q |
| |
|
| |||||||||||| || | |||||| | || |||||||||||||||| || |||||||||||||||||||||||| ||||||| |
|
|
| T |
2659039 |
agtttgatttattggaagaataaaaatatttaatagtgagttcaagaaaaccagggatcgtagtcttaggaacactagcatttgtagaactcgatgaaag |
2659138 |
T |
|
| Q |
436 |
actgtaaattttttcaataacaaaatagggaagctgattttcaagtaagaataaatctgatgttatatcattttctaaccaaggttttaagagat---ca |
532 |
Q |
| |
|
||||||||| ||||||||| ||| |||||||||||||||||||||| ||||||||| ||| |||| ||| |||||||||||||| || ||| || |
|
|
| T |
2659139 |
tttgtaaatttcttcaataacgaaaaagggaagctgattttcaagtaacaataaatctaatgctataccatcatctaaccaaggtttaaatagaaaccca |
2659238 |
T |
|
| Q |
533 |
ccttcacaacaggatctcaaaaaatgttcaattataaaaccggaatccattaaaattaacttaacaagttcattatgagaaaatggtagggtttcggaat |
632 |
Q |
| |
|
| ||| || || || || ||||| ||| ||||||||||| |||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2659239 |
tcatcataatagtatgtccaaaaaagttgaattataaaacaggaatcgattaagattaacttaacaagttcattatcagaaaatggtagggtttcggaat |
2659338 |
T |
|
| Q |
633 |
aacagcctttgaaatcagataagatagattctatgtagttgaccaaggtgtttaaacaatatgcctcggttcgtttgagaaaagctttgaagtaaatgag |
732 |
Q |
| |
|
|||| | ||||||| ||||||| |||||| ||||| | |||||||||||| |||||| ||| | |||||||| |||||||||||| ||||||||||| |
|
|
| T |
2659339 |
aacaacttttgaaacgagataagttagattttatgttgctgaccaaggtgtctaaaca---tgcattggttcgttggagaaaagctttcaagtaaatgag |
2659435 |
T |
|
| Q |
733 |
tttgtgacgttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaacaactttgggagtgtatgcctcttcgttgagtttgcgaatt |
832 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| | |||| |||||||| | |||||||||| ||||||| |
|
|
| T |
2659436 |
tttgtgacgttccatgttttggagctgggggtgatcatggtgaaaggggccaatggaaacgagagtgggggtgtatgctttttcgttgagtgtgcgaata |
2659535 |
T |
|
| Q |
833 |
ttagaggggaccttgt |
848 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2659536 |
gcagaggggaccttgt |
2659551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 151 - 820
Target Start/End: Complemental strand, 2952163 - 2951500
Alignment:
| Q |
151 |
caagtcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactcagttgcactcggtaaatgtattatctgttcgtcgatc |
250 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| | | |
|
|
| T |
2952163 |
caagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaa-- |
2952066 |
T |
|
| Q |
251 |
gcttctctactcggtcgactttcaataggatgtttcaaatgaaatatcctagtcagatcagtgaagtgcattatactaatatctttattatcaaaactca |
350 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| || |
|
|
| T |
2952065 |
----ctctactcggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatcca |
2951970 |
T |
|
| Q |
351 |
attttgatttattgaaaccttgaaaataatcaaaagtgagttcaagaaaagaa-ggaacactagc-atttgtaga--actgaatgaaagactgtaaattt |
446 |
Q |
| |
|
|||||||||||||| || |||||||| || |||||||| |||||||||| ||| || ||| || | | | | | ||||||||||||||||||| |
|
|
| T |
2951969 |
attttgatttattgtaataaccaaaataatgaatagtgagtttaagaaaagaatggatca-tagtgataggaacattagtcaatgaaagactgtaaattt |
2951871 |
T |
|
| Q |
447 |
tttcaataacaaaatagggaagctgattttcaagtaagaataaatctgatgttatatcattttctaaccaaggttttaagagatcaccttcacaacagga |
546 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||| ||||||| | ||||| || | ||||||||||||| ||||| || |||||| ||||||| |
|
|
| T |
2951870 |
tttcaataacgaaaaagggaagctgattttcaagtaaccataaatcgtgtattataccagtacctaaccaaggtttaaagagctccccttcataacagga |
2951771 |
T |
|
| Q |
547 |
tctcaaaaaatgttcaattataaaaccggaatccattaaaattaacttaacaagttcattatgagaaaatggtagggtttcggaataacagcctttgaaa |
646 |
Q |
| |
|
| || ||||| ||| |||||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||| | ||||||| |
|
|
| T |
2951770 |
tgtccaaaaaagttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaa |
2951671 |
T |
|
| Q |
647 |
tcagataagatagattctatgtagttgaccaaggtgtttaaacaatatgcctcggttcgtttgagaaaagctttgaagtaaatgagtttgtgacgttcca |
746 |
Q |
| |
|
|||||||||||||||||||||||| || ||| |||||||| |||||| ||||| || ||||||| | ||||||||||||||||| |||| ||||| |
|
|
| T |
2951670 |
tcagataagatagattctatgtagacaactaagtcgtttaaac---atgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttcca |
2951574 |
T |
|
| Q |
747 |
tgttttggagctgggggtgaccgtggtgaaaggggccaatggaaacaactttgggagtgtatgcctcttcgttg |
820 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||| |||| |||| |
|
|
| T |
2951573 |
tgttttggagctgggggtgaccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttg |
2951500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 151 - 848
Target Start/End: Complemental strand, 2964739 - 2964012
Alignment:
| Q |
151 |
caagtcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactcagttgcactcggtaaatgtattatctgttcgtcgatc |
250 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || ||| |
|
|
| T |
2964739 |
caagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactaggtagatgtattatctgtttgttgatg |
2964640 |
T |
|
| Q |
251 |
gcttctctactcggtcgactttcaataggatgtttcaaatgaaatatcctagtcagatcagtgaagtgcattatactaatatctttattatcaaaactca |
350 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| || |
|
|
| T |
2964639 |
ttgtctctactcggccgattttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatcca |
2964540 |
T |
|
| Q |
351 |
attttgatttattgaaaccttgaaaataatcaaaagtgagttcaagaaaaga---------------aggaacactagcatttgtagaactgaatgaaag |
435 |
Q |
| |
|
|||||||||||||| || | |||||||||| |||||||| ||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
2964539 |
attttgatttattgtaataatcaaaataatcagtagtgagtttaagaaaagaagggatgttagtgttaggaacactagcatttgtagaactcaatgaaag |
2964440 |
T |
|
| Q |
436 |
actgtaaattttttcaataacaaaatagggaagctgattttcaagtaagaataaatctgatgttatatcattttctaaccaaggttttaagaga------ |
529 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| ||||| || | |||||||||| | ||||| |
|
|
| T |
2964439 |
actgtaaattttttcaataacgaaatagggaagctgattttcaagtaacattaaatctgatcttataccaacatataaccaaggtatagagagaatatta |
2964340 |
T |
|
| Q |
530 |
--tcac----cttcacaacaggatctcaaaaaatgttcaattataaaaccggaatccattaaaattaacttaacaagttcattatgagaaaatggtaggg |
623 |
Q |
| |
|
||| | ||| || ||||||| ||||| |||||||||||||||| ||||| ||||| |||||||| |||||||||| ||||||||||||||| | |
|
|
| T |
2964339 |
atgcaccgaacatcataataggatctgcaaaaaagttcaattataaaaccagaatcgattaagattaacttgacaagttcatcatgagaaaatggtagag |
2964240 |
T |
|
| Q |
624 |
tttcggaataacagcctttgaaatcagataagatagattctatgtagttgaccaaggtgtttaaacaatatgcctcggttcgtttgagaaaagctttgaa |
723 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||| ||||| ||||| || || ||||||||||| ||||||| ||||||| |
|
|
| T |
2964239 |
tttcggaataacagcatttgaaatcagataagatagcatctatgtagtagaccatttcgttta---aagttgtctcggttcgttggagaaaatctttgaa |
2964143 |
T |
|
| Q |
724 |
gtaaatgagtttgtgacgttccatgttttgga------gctgggggtgaccgtggtgaaaggggccaatggaaacaactttgggagtgtatgcctcttcg |
817 |
Q |
| |
|
|||||||||||| || |||||||||||||||| | |||||||||||||||||||||||||| |||||||| | ||||| |||||||| | |||| |
|
|
| T |
2964142 |
gtaaatgagtttttgtcgttccatgttttggatctgggggtgggggtgaccgtggtgaaaggggccgatggaaacgaacttgggggtgtatgcgttttcg |
2964043 |
T |
|
| Q |
818 |
ttgagtttgcgaattttagaggggaccttgt |
848 |
Q |
| |
|
|||||| ||||||| | |||||||||||||| |
|
|
| T |
2964042 |
ttgagtgtgcgaatatcagaggggaccttgt |
2964012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 151 - 831
Target Start/End: Complemental strand, 2934829 - 2934146
Alignment:
| Q |
151 |
caagtcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactcagttgcactcggtaaatgtattatctgttcgtcgatc |
250 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| |||||||||| |||| | ||| |||||||||||| | |
|
|
| T |
2934829 |
caagtcaagtaaacacttacttttagtattcactttaaacctaactccagcttctaacaattcagttgcaccgggtagacttatcttctgttcgtcgaac |
2934730 |
T |
|
| Q |
251 |
gcttctctactcggtcgactttcaataggatgtttcaaatgaaatatcctagtcagatcagtgaagtgcattatactaatatctttattatcaaaactca |
350 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| || |
|
|
| T |
2934729 |
atgtctctactcggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatcca |
2934630 |
T |
|
| Q |
351 |
attttgatttattgaaaccttgaaaataatcaaaagtgagttcaagaaaagaa----ggaacactagcatttgtagaactg---aatgaaagactgtaaa |
443 |
Q |
| |
|
|||||||||||||| || |||||||| || ||||||| |||||||||| | | || ||| || | | | | |||||||||||||||| |
|
|
| T |
2934629 |
attttgatttattgtaataaccaaaataatgaatagtgagtctaagaaaagaatattgtatca-tagtgttgggatcattagtcaatgaaagactgtaaa |
2934531 |
T |
|
| Q |
444 |
ttttttcaataacaaaatagggaagctgattttcaagtaagaataaatctgatgttatatcattttctaaccaaggttttaagagatcaccttcacaaca |
543 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||| | |||||| ||||||| || | |||||| ||||||| |||||| |||||| || | |
|
|
| T |
2934530 |
ttttttcaataacgaaaaagggaagctgattttcaagtaacattaaatcgtctgttataccagtatctaacaaaggtttaaagagacgcccttcataata |
2934431 |
T |
|
| Q |
544 |
ggatctcaaaaaatgttcaattataaaaccggaatccattaaaattaacttaacaagttcattatgagaaaatggtagggtttcggaataacagcctttg |
643 |
Q |
| |
|
| |||| ||||| ||| |||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| | |||| |
|
|
| T |
2934430 |
gtctctccaaaaaagttgaattataaaagcggaatctattaaaattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacgtttg |
2934331 |
T |
|
| Q |
644 |
aaatcagataagatagattctatgtagttgaccaaggtgtttaaacaatatgcctcggttcgtttgagaaaagctttgaagtaaatgagtttgtgacgtt |
743 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||| |||||||| |||||| ||||| || ||||||| | ||||||||||||||||| |||| || |
|
|
| T |
2934330 |
aaatcagataagatagattctatgtagcagactaagtcgtttaaac---atgccttggttctttggagaaaatccttgaagtaaatgagtttctgacttt |
2934234 |
T |
|
| Q |
744 |
ccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaacaactttgggagtgtatgcctcttcgttgagtttgcgaat |
831 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||| |||| |||| || ||||||| |
|
|
| T |
2934233 |
ccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtctttgttgtgtctgcgaat |
2934146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 151 - 831
Target Start/End: Complemental strand, 2927390 - 2926707
Alignment:
| Q |
151 |
caagtcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactcagttgcactcggtaaatgtattatctgttc---gtcg |
247 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||| | | | |
|
|
| T |
2927390 |
caagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatcatccctaggcag |
2927291 |
T |
|
| Q |
248 |
atcgcttctctactcggtcgactttcaataggatgtttcaaatgaaatatcctagtcagatcagtgaagtgcattatactaatatctttattatcaaaac |
347 |
Q |
| |
|
| | ||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
2927290 |
acccggtctctactcggccgactttcaataggatgttgcaaatgaaatatccgaatcagatcagtgaagtgccttataataatatcacccttatcaaaat |
2927191 |
T |
|
| Q |
348 |
tcaattttgatttattgaaaccttgaaaataatcaaaagtgagttcaagaaaagaa-ggaacactagcatttgtag-aac-----tgaatgaaagactgt |
440 |
Q |
| |
|
||||||||||||||||| || |||||||| || |||||||| |||||||||| ||| || ||| | |||| ||| | ||||||||||||| |
|
|
| T |
2927190 |
tcaattttgatttattgtaataaccaaaataatgaatagtgagtttaagaaaagaatggatca-tag---tggtaggaacattagtcaatgaaagactgt |
2927095 |
T |
|
| Q |
441 |
aaattttttcaataacaaaatagggaagctgattttcaagtaagaataaatctgatgttatatcattttctaaccaaggttttaagagatcaccttcaca |
540 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||| ||||||| | ||||| |||| |||||||||||||| |||||| ||||| | |
|
|
| T |
2927094 |
aaattttttcaataacgaaaaagggaagctgattttcaagtaaccataaatcgtgtcttataccattatctaaccaaggtttaaagagacacccttcgta |
2926995 |
T |
|
| Q |
541 |
acaggatctcaaaaaatgttcaattataaaaccggaatccattaaaattaacttaacaagttcattatgagaaaatggtagggtttcggaataacagcct |
640 |
Q |
| |
|
| ||||| || ||||| ||| |||||||||| |||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | | |
|
|
| T |
2926994 |
ataggatgtccaaaaaagttgaattataaaagcggaattgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcggaataacaacgt |
2926895 |
T |
|
| Q |
641 |
ttgaaatcagataagatagattctatgtagttgaccaaggtgtttaaacaatatgcctcggttcgtttgagaaaagctttgaagtaaatgagtttgtgac |
740 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||| |||||||| |||||| ||||| || ||||||| | ||||||||||||||||| |||| |
|
|
| T |
2926894 |
ttgaaatcagataagatagattctatgtagccgactaagtcgtttaaac---atgccttggttctttggagaaaatccttgaagtaaatgagtttctgac |
2926798 |
T |
|
| Q |
741 |
gttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaacaactttgggagtgtatgcctcttcgttgagtttgcgaat |
831 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||| |||||||| |||| |||| || ||||||| |
|
|
| T |
2926797 |
tttccatgttttggagctggggttgaccgtggtgaaaggggccaatagaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaat |
2926707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 151 - 848
Target Start/End: Complemental strand, 2983093 - 2982396
Alignment:
| Q |
151 |
caagtcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactcagttgcactcggtaaatgtattatctgttcgtcgatc |
250 |
Q |
| |
|
||||||| |||||||| |||||||| |||||||||||||||||||||||||||| ||||| ||||||| || ||| |||||||||| ||| |||||| |
|
|
| T |
2983093 |
caagtcatataaacacttacttttagttttcacttgaaacctaactccagcttctaccaactgagttgcagtctgtatatgtattatccgtttttcgatc |
2982994 |
T |
|
| Q |
251 |
gcttctctactcggtcgactttcaataggatgtttcaaatgaaatatcctagtcagatcagtgaagtgcattatactaatatctttattatcaaaactca |
350 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||| || |
|
|
| T |
2982993 |
ttgactctactcggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccattatcaaaagaca |
2982894 |
T |
|
| Q |
351 |
attttgatttattgaaaccttgaaaataatcaaaagtgagttcaagaaaagaaggaacactagcatttgtagaactgaatgaaagactgtaaattttttc |
450 |
Q |
| |
|
||||||||||||| || || ||| |||| | ||||||||||||||||||||||||||| | | | |||| ||||| |||||||||||||||| |
|
|
| T |
2982893 |
attttgatttattcaattttttaaagtaatggatagtgagttcaagaaaagaaggaacacttttgtatatggaac---atgaacgactgtaaattttttc |
2982797 |
T |
|
| Q |
451 |
aataacaaaatagggaagctgattttcaagtaagaataaatctgatgttatatcattttctaaccaaggttttaagagatcaccttcacaacaggatctc |
550 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||| | || ||| || |||| | ||| ||||||||||| |||||| | || || || | |||| |
|
|
| T |
2982796 |
aataacgaaaaagggaagctgattttcaagtaacagtacatcatataatataagactttttaaccaaggttgaaagagagccccaccataatattttctc |
2982697 |
T |
|
| Q |
551 |
aaaaaatgttcaattataaaaccggaatccattaaaattaacttaacaagttcattatgagaaaatggtagggtttcggaataacagcctttgaaatcag |
650 |
Q |
| |
|
||||| ||| |||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| |
|
|
| T |
2982696 |
caaaaaagttgaattataaaagcggaatcgattaagattaacttaacaagttcattatgagaaaatggtaggggttcagaataacagtgtttgaaatcag |
2982597 |
T |
|
| Q |
651 |
ataagatagattctatgtagttgaccaaggtgtttaaacaatatgcctcggttcgtttgagaaaagctttgaagtaaatgagtttgtgacgttccatgtt |
750 |
Q |
| |
|
|||||||||| |||| |||| ||||||| ||||| || ||||||||||||||| |||||||||||||||| |||||| || |||||||||||||| |
|
|
| T |
2982596 |
ataagatagaatctacgtagcagaccaagtcgttta---aagatgcctcggttcgttgaagaaaagctttgaagtgaatgagcttctgacgttccatgtt |
2982500 |
T |
|
| Q |
751 |
ttggagctgg------gggtgaccgtggtgaaaggggccaatggaaacaactttgggagtgtatgcctcttcgttgagtttgcgaattttagaggggacc |
844 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||| || ||||| |||||||| | |||||||| | ||||||| |||||||||| |
|
|
| T |
2982499 |
ttggagatggaggcctaggtgaccgtggtgaaaggggccaatggaaacgacattgggggtgtatgcgttttcgttgactgtgcgaataacagaggggacc |
2982400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 151 - 848
Target Start/End: Original strand, 3003632 - 3004329
Alignment:
| Q |
151 |
caagtcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactcagttgcactcggtaaatgtattatctgttcgtcgatc |
250 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||| ||| |||||||||||||||||||||||||||||||||||| |||| | ||| ||| || |
|
|
| T |
3003632 |
caagtcaagtaaacacttactttcagtgttcactttaaatctaactccagcttctaacaactcagttgcactcggtggatgtttcatccattctctga-- |
3003729 |
T |
|
| Q |
251 |
gcttctctactcggtcgactttcaataggatgtttcaaatgaaatatcctagtcagatcagtgaagtgcattatactaatatctttattatcaaaactca |
350 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||| || |
|
|
| T |
3003730 |
----ctctactcggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgacttatactaatatcacccttatcaaaatcca |
3003825 |
T |
|
| Q |
351 |
attttgatttattgaaaccttgaaaataatcaaaagtgagttcaagaaaagaa-ggaacactagcatttgtag-aac-----tgaatgaaagactgtaaa |
443 |
Q |
| |
|
|||||||||||||| || |||||||| || |||||||| |||||||||| ||| || ||| | |||| ||| | |||||||||||||||| |
|
|
| T |
3003826 |
attttgatttattgtaataaccaaaataatgaatagtgagtttaagaaaagaatggatca-tag---tggtaggaacattagtcaatgaaagactgtaaa |
3003921 |
T |
|
| Q |
444 |
ttttttcaataacaaaatagggaagctgattttcaagtaagaataaatctgatgttatatcattttctaaccaaggttttaagagat--cacct----tc |
537 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||| ||||||| | ||||| |||| |||||||||||||| |||||| |||| || |
|
|
| T |
3003922 |
ttttttcaataacgaaaaagggaagctgattttcaagtaaccataaatcgtttcttataccattatctaaccaaggtttaaagagaatgcaccgacgatc |
3004021 |
T |
|
| Q |
538 |
acaacaggatctcaaaaaatgttcaattataaaaccggaatccattaaaattaacttaacaagttcattatgagaaaatggtagggtttcggaataacag |
637 |
Q |
| |
|
| || || ||||| ||||| ||| |||||||||| ||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3004022 |
ataatagtatctccaaaaaagttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcggaataacaa |
3004121 |
T |
|
| Q |
638 |
cctttgaaatcagataagatagattctatgtagttgaccaaggtgtttaaacaatatgcctcggttcgtttgagaaaagctttgaagtaaatgagtttgt |
737 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||| ||| ||| |||||||| |||||| ||||| || ||||||| | ||||||||||||||||| | |
|
|
| T |
3004122 |
cgtttgaaatcagataagacagattctatgtagcagactaagtcgtttaaac---atgccttggttctttggagaaaatccttgaagtaaatgagtttct |
3004218 |
T |
|
| Q |
738 |
gacgttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaacaactttgggagtgtatgcctcttcgttgagtttgcgaattttaga |
837 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||| |||| |||| || ||||||| | | |
|
|
| T |
3004219 |
gattttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtctttgttgtgtctgcgaataacata |
3004318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 256 - 848
Target Start/End: Original strand, 2997341 - 2997945
Alignment:
| Q |
256 |
tctactcggtcgactttcaataggatgtttcaaatgaaatatcctagtcagatcagtgaagtgcattatactaatatctttattatcaaaactcaatttt |
355 |
Q |
| |
|
||||| ||| ||| |||||| ||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| || ||||||| ||| ||| |
|
|
| T |
2997341 |
tctacccggccgattttcaaagggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccatcatcaaaaaacaagttt |
2997440 |
T |
|
| Q |
356 |
gatttattgaaaccttgaaaataatcaaaagtgagttcaagaaaagaaggaac---------------actagcatttgtagaactgaatgaaagactgt |
440 |
Q |
| |
|
|||||||||||| ||| ||| || |||||||||||||||| |||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
2997441 |
gatttattgaaagaaaagaaaaaattaatagtgagttcaagaaaacaagggatcatagtgttaggattactagcatttgtagaactgaatgaaagactgt |
2997540 |
T |
|
| Q |
441 |
aaattttttcaataacaaaatagggaagctgattttcaagtaagaataaatctgatgttatatcattttctaaccaaggttttaagagatcaccttcaca |
540 |
Q |
| |
|
|||||||||||||||| ||| ||||||| |||||||||||||| | ||||| || ||||||| ||| || |||||| ||| |||| | || || | |
|
|
| T |
2997541 |
aaattttttcaataacgaaaaagggaagttgattttcaagtaacattaaatttgttgttataccatcatcgaaccaaagttcaaagacaaacccaccata |
2997640 |
T |
|
| Q |
541 |
acaggatctcaaaaaatgttcaattataaaaccggaatccattaaaattaacttaacaagttcattatgagaaaatggtagggtttcggaataacagcct |
640 |
Q |
| |
|
| ||||||| ||| |||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | | |
|
|
| T |
2997641 |
gtggtatctcaagaaaagttcaattataaaaccggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcggaataacaacgt |
2997740 |
T |
|
| Q |
641 |
ttgaaatcagataagatagattctatgtagttgaccaaggtgtttaaacaatatgcctcggttcgtttgagaaaagctttgaagtaaatgagtttgtgac |
740 |
Q |
| |
|
||||||| |||||||||||| |||| |||| || ||| |||||||| |||||| ||||||| ||||||||||||||||| ||||||||| ||| |
|
|
| T |
2997741 |
ttgaaattagataagatagaatctacgtagcatactaagtcatttaaaca---tgcctcagttcgttggagaaaagctttgaagtgaatgagtttctgag |
2997837 |
T |
|
| Q |
741 |
gttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaacaactttgggagtgtatgcctcttcgttgagtttgcgaattttagaggg |
840 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||||||||||||||||||| || |||| |||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
2997838 |
gttccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtctgcgttgagtttgcgaattttagaggg |
2997937 |
T |
|
| Q |
841 |
gaccttgt |
848 |
Q |
| |
|
|||||||| |
|
|
| T |
2997938 |
gaccttgt |
2997945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 151 - 333
Target Start/End: Complemental strand, 2937690 - 2937508
Alignment:
| Q |
151 |
caagtcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactcagttgcactcggtaaatgtattatctgttcgtcgatc |
250 |
Q |
| |
|
||||||||||||||| | ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2937690 |
caagtcaagtaaacaattactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtattatctgttcgtcgatc |
2937591 |
T |
|
| Q |
251 |
gcttctctactcggtcgactttcaataggatgtttcaaatgaaatatcctagtcagatcagtgaagtgcattatactaatatc |
333 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
2937590 |
gcttctctactcggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgacttatactaatatc |
2937508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 656 - 848
Target Start/End: Complemental strand, 2972720 - 2972528
Alignment:
| Q |
656 |
atagattctatgtagttgaccaaggtgtttaaacaatatgcctcggttcgtttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttttgga |
755 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2972720 |
atagattctatatagttgaccaaggtgtttaaacatcc--ccccgtttcttttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttttgga |
2972623 |
T |
|
| Q |
756 |
gctgggggtgaccgtggtgaaaggggccaatggaaacaactttgggagtg--tatgcctcttcgttgagtttgcgaattttagaggggaccttgt |
848 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2972622 |
gctgggtttgaacgtggtgaaaggggccaatggaaacgactttgggagtgtatatgcctcttcgttgagtttgcgaattttagaggggaccttgt |
2972528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 2929538 - 2929467
Alignment:
| Q |
152 |
aagtcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactcagttgcactc |
223 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2929538 |
aagtcaagtaaacacttacttttagtgttcactttaaacctaactccagcttctaacaactcagttgcactc |
2929467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 2934656 - 2934713
Alignment:
| Q |
90 |
ataaggcacttcactgatctgattaggatatttcatttgcaacatcctgttgaaagtc |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2934656 |
ataaggcacttcactgatctgattaggatatttcatttgcaacatcctattgaaagtc |
2934713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 2951996 - 2952053
Alignment:
| Q |
90 |
ataaggcacttcactgatctgattaggatatttcatttgcaacatcctgttgaaagtc |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2951996 |
ataaggcacttcactgatctgattaggatatttcatttgcaacatcctattgaaagtc |
2952053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 2982920 - 2982977
Alignment:
| Q |
90 |
ataaggcacttcactgatctgattaggatatttcatttgcaacatcctgttgaaagtc |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2982920 |
ataaggcacttcactgatctgattaggatatttcatttgcaacatcctattgaaagtc |
2982977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 2964566 - 2964620
Alignment:
| Q |
90 |
ataaggcacttcactgatctgattaggatatttcatttgcaacatcctgttgaaa |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2964566 |
ataaggcacttcactgatctgattaggatatttcatttgcaacatcctattgaaa |
2964620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 2997221 - 2997303
Alignment:
| Q |
151 |
caagtcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactcagttgcactcggtaaatgta |
233 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| |||| ||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
2997221 |
caagtcaagtaaacacttgcttttagtgttcactttaaacttaactccagcttctaacaactcagttgcacttggtagatgta |
2997303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 2927214 - 2927271
Alignment:
| Q |
90 |
ataaggcacttcactgatctgattaggatatttcatttgcaacatcctgttgaaagtc |
147 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
2927214 |
ataaggcacttcactgatctgattcggatatttcatttgcaacatcctattgaaagtc |
2927271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 2937517 - 2937574
Alignment:
| Q |
90 |
ataaggcacttcactgatctgattaggatatttcatttgcaacatcctgttgaaagtc |
147 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2937517 |
ataagtcacttcactgatctgattaggatatttcatttgcaacatcctattgaaagtc |
2937574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 3003799 - 3003742
Alignment:
| Q |
90 |
ataaggcacttcactgatctgattaggatatttcatttgcaacatcctgttgaaagtc |
147 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3003799 |
ataagtcacttcactgatctgattaggatatttcatttgcaacatcctattgaaagtc |
3003742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 2997409 - 2997363
Alignment:
| Q |
90 |
ataaggcacttcactgatctgattaggatatttcatttgcaacatcc |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2997409 |
ataaggcacttcactgatctgattaggatatttcatttgcaacatcc |
2997363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 2659012 - 2658958
Alignment:
| Q |
90 |
ataaggcacttcactgatctgattaggatatttcatttgcaacatcctgttgaaa |
144 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
2659012 |
ataatgcacttcactgatctgattaggatatttcatttgcaacttcctattgaaa |
2658958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 2974014 - 2974120
Alignment:
| Q |
40 |
ttcaatatttcaatcaatcaaaattggtttttgataataatagtcagtgcataaggcacttcactgatctgattaggatatttcatttgcaacatcctgt |
139 |
Q |
| |
|
|||||| ||||||| || ||||||||| ||||||||| ||| | | |||| |||||||| ||||||||||||||||||||||||| |||||||| | |
|
|
| T |
2974014 |
ttcaatgtttcaataaaccaaaattgggttttgataacaatgatattagtataatgcacttcaatgatctgattaggatatttcatttgaaacatcctat |
2974113 |
T |
|
| Q |
140 |
tgaaagt |
146 |
Q |
| |
|
||||||| |
|
|
| T |
2974114 |
tgaaagt |
2974120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 2978472 - 2978408
Alignment:
| Q |
155 |
tcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactcagttgca |
220 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||| |
|
|
| T |
2978472 |
tcaagtaaacactcacttttagtgttcactttaaacctaa-tccagcttctaacaattcagttgca |
2978408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 804 - 848
Target Start/End: Complemental strand, 2929460 - 2929416
Alignment:
| Q |
804 |
tgtatgcctcttcgttgagtttgcgaattttagaggggaccttgt |
848 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2929460 |
tgtatgcgtcttcgttgagtttgcgaattttagagggaaccttgt |
2929416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 180
Target Start/End: Complemental strand, 2954571 - 2954542
Alignment:
| Q |
151 |
caagtcaagtaaacactcacttttaggctt |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
2954571 |
caagtcaagtaaacactcacttttaggctt |
2954542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 150 - 848
Target Start/End: Original strand, 35089 - 35775
Alignment:
| Q |
150 |
ccaagtcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactcagttgcactcggtaaatgtattatctgttcgtcgat |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35089 |
ccaagtcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactgagttgcactcggtagatgtattatctgttcgtcgat |
35188 |
T |
|
| Q |
250 |
cgcttctctactcggtcgactttcaataggatgtttcaaatgaaatatcctagtcagatcagtgaagtgcattatactaatatct-ttattatcaaaact |
348 |
Q |
| |
|
| |||||||| || |||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||| | | | || |||||||||||| |
|
|
| T |
35189 |
cttgtctctacttggctgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatgc-actgactattattatcaaaaac |
35287 |
T |
|
| Q |
349 |
caattttgatttattgaaaccttgaaaataatcaaaagtgagttcaagaaaagaaggaacactagcatttgtagaactgaatgaaagactgtaaattttt |
448 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| || ||||||||||||||||||| ||||||||||||| | ||||||| |||||||||| |
|
|
| T |
35288 |
caattttgattgattgaaatattgaaaataattaatagtgagttcaagaaaagaac---------catttgtagaactccacgaaagaccgtaaattttt |
35378 |
T |
|
| Q |
449 |
tcaataacaaaatagggaagctgattttcaagtaagaataaatctgatgttatatcattttctaaccaaggttttaagagatcaccttcacaacaggatc |
548 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| |||||||||||| ||||| || ||||||||||||| || || ||| ||| || | || |
|
|
| T |
35379 |
tcaataacgaaaaagggaagctgattttcaagtaacaataaatctgatcttataccagcatctaaccaaggttctaggaaatct--ttcttaaaat-att |
35475 |
T |
|
| Q |
549 |
tcaaaaaatgttcaattataaaaccggaatccattaaaattaacttaacaagttcattat---gagaaaatggtagggtttcggaataacagcctttgaa |
645 |
Q |
| |
|
|| ||||| ||| |||||||||||||||||| ||||| ||||||||||||||||| | || ||| ||||| ||||||||| |||||||| | |||||| |
|
|
| T |
35476 |
tccaaaaaagttgaattataaaaccggaatcgattaagattaacttaacaagttcttcatcctgaggaaatgatagggtttccgaataacaacatttgaa |
35575 |
T |
|
| Q |
646 |
atcagataagatagattctatgtagttgaccaaggtgtttaaacaatatgcctcggttcgtttgagaaaagctttgaagtaaatgagtttgtgacgttcc |
745 |
Q |
| |
|
||||||||||||||| | ||||| | ||| |||| || ||||| | ||| | |||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35576 |
atcagataagatagaatatatgtcgctgatcaagatgcttaaaga---tgcattggttcgttggagaaaatctttgaagtaaatgagtttgtgacgttcc |
35672 |
T |
|
| Q |
746 |
atgttttggagctgggggtgaccgtggtgaaaggggccaatggaaacaactttgggagtgtatgcctcttcgttgagtttgcgaattttagaggggacct |
845 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| | || || |||||||| ||||| ||| |||||||||| ||||||||||| |
|
|
| T |
35673 |
atgtttttgagctgggggtgaccgtggtgaaaggggccaatggaaacgaaattaggggtgtatgcgtcttcattgtgtttgcgaataacagaggggacct |
35772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 35336 - 35198
Alignment:
| Q |
17 |
tcttgaactcaccatgaatgatattcaatatttcaatcaatcaaaattggtttttgataataatagtcagtgcataaggcacttcactgatctgattagg |
116 |
Q |
| |
|
|||||||||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35336 |
tcttgaactcactattaattattttcaatatttcaatcaatcaaaattggtttttgataataatagtcagtgcataaggcacttcactgatctgattagg |
35237 |
T |
|
| Q |
117 |
atatttcatttgcaacatcctgttgaaagtcagccaagt |
155 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35236 |
atatttcatttgcaacatcctattgaaagtcagccaagt |
35198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 45128 - 45168
Alignment:
| Q |
180 |
tcacttgaaacctaactccagcttctaacaactcagttgca |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45128 |
tcacttgaaacctaactccagcttctaacaactcatttgca |
45168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 1e-62; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 552 - 831
Target Start/End: Complemental strand, 3339004 - 3338728
Alignment:
| Q |
552 |
aaaaatgttcaattataaaaccggaatccattaaaattaacttaacaagttcattatgagaaaatggtagggtttcggaataacagcctttgaaatcaga |
651 |
Q |
| |
|
||||| ||| |||||||||||||||||| ||||| |||||||||||||||| || || |||||||| |||| ||| |||||||| | ||||||||||| |
|
|
| T |
3339004 |
aaaaaagttgaattataaaaccggaatcgattaagattaacttaacaagtttatcatcagaaaatgttaggaattccgaataacaacgtttgaaatcagg |
3338905 |
T |
|
| Q |
652 |
taagatagattctatgtagttgaccaaggtgtttaaacaatatgcctcggttcgtttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttt |
751 |
Q |
| |
|
||||||||| |||| |||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3338904 |
taagatagactctacgtagaagaccaagtcttttaaaca---tgcctcggttcgttggagaaaagctttgaagtaaatgagtttgtgacgttccatgttt |
3338808 |
T |
|
| Q |
752 |
tggagctgggggtgaccgtggtgaaaggggccaatggaaac-aactttgggagtgtatgcctcttcgttgagtttgcgaat |
831 |
Q |
| |
|
| ||| ||| | ||||||||||||||||||||||||||| ||||| ||| |||||||| ||||| ||| |||||||||| |
|
|
| T |
3338807 |
tagagtcgggttttaccgtggtgaaaggggccaatggaaacgaacttaggg-gtgtatgcgtcttcattgtgtttgcgaat |
3338728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 3339255 - 3339187
Alignment:
| Q |
151 |
caagtcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactcagttgc |
219 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
3339255 |
caagccaagtaaacactcacttttagtgttcactttaaacctaactcctgcttctaacaactcagttgc |
3339187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 453 - 529
Target Start/End: Complemental strand, 3339091 - 3339015
Alignment:
| Q |
453 |
taacaaaatagggaagctgattttcaagtaagaataaatctgatgttatatcattttctaaccaaggttttaagaga |
529 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| ||||||||||||| |||| || | | ||||||||||| |||||| |
|
|
| T |
3339091 |
taacgaaaaagggaagctgattttcaagtaacaataaatctgatgatataccacctaccaaccaaggtttaaagaga |
3339015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 697 - 753
Target Start/End: Complemental strand, 20012272 - 20012216
Alignment:
| Q |
697 |
ctcggttcgtttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttttg |
753 |
Q |
| |
|
||||| ||||| |||||| |||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
20012272 |
ctcggatcgttggagaaatgctttgaagtaactgagtttgtgacattccatgttttg |
20012216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 3339092 - 3339129
Alignment:
| Q |
106 |
atctgattaggatatttcatttgcaacatcctgttgaa |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3339092 |
atctgattaggatatttcatttgcaacatcctattgaa |
3339129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 3339129 - 3339092
Alignment:
| Q |
271 |
ttcaataggatgtttcaaatgaaatatcctagtcagat |
308 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
3339129 |
ttcaataggatgttgcaaatgaaatatcctaatcagat |
3339092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 4e-28; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 155 - 529
Target Start/End: Complemental strand, 49613662 - 49613279
Alignment:
| Q |
155 |
tcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactcagttgcactcggtaaatgtattatctgttcgtcgatcgctt |
254 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| || ||||||||||||||||||||||||||| ||| |||| | || |||| || || |
|
|
| T |
49613662 |
tcaagtaaacactcacttttagtgttcactttaaacctcaccccagcttctaacaactcagttgcactctgtagatgtttcattggttcatcaat----- |
49613568 |
T |
|
| Q |
255 |
ctctactcggtcgactttcaataggatgtttcaaatgaaatatcctagtcagatcagtgaagtgcattatactaatatctttattatcaaaactcaattt |
354 |
Q |
| |
|
|||| ||| || |||| | |||||||| || || || |||||| ||||||||||||||||| ||||||||| ||| ||||||||||| ||| || |
|
|
| T |
49613567 |
-tctaagcggccgtctttgcaaaggatgttgcaggtggaaaatcctaatcagatcagtgaagtgccttatactaaaatcgccattatcaaaacccaagtt |
49613469 |
T |
|
| Q |
355 |
tgatttattgaaaccttgaaaataatcaaaagtgagttcaagaaaagaa---------------ggaacactagcatttgtagaactgaatgaaagactg |
439 |
Q |
| |
|
||||| |||| || | ||||||||||||| | ||||||||||||||| ||||||||||| || |||||| | ||||||||| || |
|
|
| T |
49613468 |
tgattgattgtaatatgcaaaataatcaaaactaagttcaagaaaagaagggattttagtcttgggaacactagcgttagtagaagtaaatgaaagattg |
49613369 |
T |
|
| Q |
440 |
taaattttttcaataacaaaatagggaagctgattttcaagtaagaataaatctgatgttatatcattttctaaccaaggttttaagaga |
529 |
Q |
| |
|
||||||| || |||||||||| | || | |||||||||||||| || |||||| || |||| | | |||||||||||||||||||| |
|
|
| T |
49613368 |
taaatttcttgaataacaaaaaatggcaattgattttcaagtaacaacaaatctaatcttatgttagaagctaaccaaggttttaagaga |
49613279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 269 - 670
Target Start/End: Complemental strand, 49618530 - 49618100
Alignment:
| Q |
269 |
ctttcaataggatgtttcaaatgaaatatcctagtcagatcagtgaagtgcattatactaatatctttattatcaaaactcaattttgatttatt----- |
363 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||||| ||||||||||||||| |
|
|
| T |
49618530 |
ctttcaataggatgttccaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccgtcatcaaaatccaattttgatttattaataa |
49618431 |
T |
|
| Q |
364 |
--gaaaccttgaaaataatcaaaagtgagttcaagaaaagaaggaacacta---gcatttgtagaactgaatgaaagactgtaaattttttcaataacaa |
458 |
Q |
| |
|
||| | |||||||| |||||| |||| |||||||||||| | || | | | || || | ||||||||| ||||||| ||||||||||| | |
|
|
| T |
49618430 |
tcaaaataataaaaataataaaaagtaagtttaagaaaagaagggatcttagacgtagtgatataagtcaatgaaagaatgtaaatattttcaataacga |
49618331 |
T |
|
| Q |
459 |
aatagggaagctgattttcaagt-aagaataaatctgatgttatatcattttctaaccaaggttttaagag------atcacct------------tcac |
539 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||||| || ||| | | | |||||| ||||||||||||| || | || |||| |
|
|
| T |
49618330 |
aatagggaagctgattttgaagtaaacaataaatctaatcttacaagactatctaacaaaggttttaagagaaacccattatcttaggaccaatgatcac |
49618231 |
T |
|
| Q |
540 |
aacaggatctcaaaaaatgttcaattataaaaccggaatccattaaaattaacttaacaagttcattatgagaaaatggtagggtttcggaataacagcc |
639 |
Q |
| |
|
|| |||||||| | ||| | |||||||| || |||||||| ||||| ||||||||||||| ||||| ||||| |||| ||||||||| ||||||| || |
|
|
| T |
49618230 |
aataggatctccagaaaagctcaattatgaacccggaatcaattaagattaacttaacaaattcatcatgagtaaattgtagggttttggaataagagtg |
49618131 |
T |
|
| Q |
640 |
tttgaaatcagataagatagattctatgtag |
670 |
Q |
| |
|
||||||| ||||||||| || ||||||||| |
|
|
| T |
49618130 |
attgaaatgagataagatggaatctatgtag |
49618100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 700 - 831
Target Start/End: Complemental strand, 49613093 - 49612956
Alignment:
| Q |
700 |
ggttcgtttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttttgga------gctgggggtgaccgtggtgaaaggggccaatggaaaca |
793 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| || ||||||||||||| | ||| |||||| |||||| || ||||||||||||| |
|
|
| T |
49613093 |
ggttcgttggagaaaagctttgaagtaaatgagtttgtggcgctccatgttttggaggtggtggtggcggtgactgtggtggaaagggccaatggaaatg |
49612994 |
T |
|
| Q |
794 |
actttgggagtgtatgcctcttcgttgagtttgcgaat |
831 |
Q |
| |
|
|||||||| |||||||| ||| |||||| ||||||| |
|
|
| T |
49612993 |
actttgggggtgtatgcgtctgggttgagactgcgaat |
49612956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 49618475 - 49618536
Alignment:
| Q |
90 |
ataaggcacttcactgatctgattaggatatttcatttgcaacatcctgttgaaagtcagcc |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| |
|
|
| T |
49618475 |
ataaggcacttcactgatctgattaggatatttcatttggaacatcctattgaaaggcagcc |
49618536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 49618654 - 49618589
Alignment:
| Q |
151 |
caagtcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactcagt |
216 |
Q |
| |
|
||||||||||||||| | |||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
49618654 |
caagtcaagtaaacatgtagttttagtgttcactttaaacctaactccagcttctaacaactcagt |
49618589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 49613499 - 49613546
Alignment:
| Q |
90 |
ataaggcacttcactgatctgattaggatatttcatttgcaacatcct |
137 |
Q |
| |
|
||||||||||||||||||||||||||||| || || ||||||||||| |
|
|
| T |
49613499 |
ataaggcacttcactgatctgattaggattttccacctgcaacatcct |
49613546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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