View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21007_low_2 (Length: 498)
Name: NF21007_low_2
Description: NF21007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21007_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 12 - 481
Target Start/End: Complemental strand, 30978248 - 30977777
Alignment:
| Q |
12 |
atgaagaggtgaagaaacacaatgttttgatgaataatgagcaaaacattacattggagttaggaatagggttgtttaaacaccaagaggaaaagttaga |
111 |
Q |
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| T |
30978248 |
atgaagaggtgaagaaacacaatgttttgatgaataatgagcaaaacattacattggagttaggaatagggttgtttaaacaccaagaggaaaagttaga |
30978149 |
T |
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| Q |
112 |
tttggagcttcatctctagctagttatgtaacaaacaaggtgcaatttatcaaacaaatttatatatatagttcagtgactagctagtactgcaaatgat |
211 |
Q |
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| T |
30978148 |
tttggagcttcatctctagctagttatgtaacaatcaaggtgcaatttatcaaacaaatttatatatatagttcagtgactagctagtactgcaaatgat |
30978049 |
T |
|
| Q |
212 |
gtgcaacttcagatatatttgttttaactttcttgcattttaattaggactttttgtattattatgcatttcaaggaccttattgtttagtatttctttt |
311 |
Q |
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| T |
30978048 |
gtgcaacttcagatatatttgttttaactttcttgcattttaattaggactttttgtattattatgcatttcaaggaccttattgtttagtatttctttt |
30977949 |
T |
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| Q |
312 |
gtaatttgttgtttaagttggatgagttcttttgtc--nnnnnnnnngttggatgaattctaaatatatatcttgtaatgatcaagtgatttagaaattt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30977948 |
gtaatttgttgtttaagttggatgagttcttttgtcaaaaaaaaaaagttggatgaattctaaatatatatcttgtaatgatcaagtgatttagaaattt |
30977849 |
T |
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| Q |
410 |
ttcaaaccataattcagaaaatattgtaagtgatgaaatcttcaaagatatgcatcatttctttttcataat |
481 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30977848 |
ttcaaaccatgattcagaaaatattgtaagtgatgaaatcttcaaagatatgcattatttctttttcataat |
30977777 |
T |
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