View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21008_high_1 (Length: 721)
Name: NF21008_high_1
Description: NF21008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21008_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 391 - 708
Target Start/End: Original strand, 37814996 - 37815312
Alignment:
| Q |
391 |
aatcttttaaataaaatttgggagaagattttctttgtttctttgagagtatcgatttgtttgagttgctcaagcttatagctccaccaaaataaactgg |
490 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| |
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| T |
37814996 |
aatcttttaaataaaatttgggagaagattttctttgtttctttgagagtatcgatttgtttgtgttgctcaaggttatagctccaccaaaataa-ctgg |
37815094 |
T |
|
| Q |
491 |
ctgttatcgttcataacattcatcttaggataggttgaaataacgaaaactttatttataatcaaacagccacctttattgtaaaattcaaggttaaccc |
590 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37815095 |
ctgttatcgttcataacattcatcttaggataggttgaaacaacgaaaactttatttataatcaaacagccacctttattgtaaaattcaaggttaaccc |
37815194 |
T |
|
| Q |
591 |
taaattcaatttttaattttctaaccaattgatatgttatagaatttcttccattttcactatgaatgtttgaatggaatggttacaaattacaatcaga |
690 |
Q |
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|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37815195 |
taaattcaagttttaattttctaaccaatggatatgttatagaatttcttccattttcactatgaatgtttgaatggaatggttacaaattacaatcaga |
37815294 |
T |
|
| Q |
691 |
aattccttcagccctatg |
708 |
Q |
| |
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|||||||||||||||||| |
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| T |
37815295 |
aattccttcagccctatg |
37815312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 37646046 - 37646264
Alignment:
| Q |
1 |
acaaaaacgaaaaatagattgtattttggctttgcaagcaagcatccttctaggtttccttccaccaattcaaggagacaattttcatatatacgagttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37646046 |
acaaaaacgaaaaatagattgtattttggctttgcaagcaagcatccttctaggtttccttccaccaattcaaggagacaattttcatatatacgaggtt |
37646145 |
T |
|
| Q |
101 |
tgattatttgcagaaaaaggtacctttacttcttaattttctttaccttaacatctataattctatatatgtagtttggtttttaaattctgcaatcctt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37646146 |
tgattatttgcagaaaaaggtacctttacttcttaattttctttaccttaacatctataattctgtatatgtagtttggtttttaaattctgcaatcctt |
37646245 |
T |
|
| Q |
201 |
gttggtttcttttcgtttt |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
37646246 |
gttggtttcttttcgtttt |
37646264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 37814797 - 37814579
Alignment:
| Q |
1 |
acaaaaacgaaaaatagattgtattttggctttgcaagcaagcatccttctaggtttccttccaccaattcaaggagacaattttcatatatacgagttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37814797 |
acaaaaacgaaaaatagattgtattttggctttgcaagcaagcatccttctaggtttccttccaccaattcaaggagacaattttcatatatacgaggtt |
37814698 |
T |
|
| Q |
101 |
tgattatttgcagaaaaaggtacctttacttcttaattttctttaccttaacatctataattctatatatgtagtttggtttttaaattctgcaatcctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37814697 |
tgattatttgcagaaaaaggtacctttacttcttaattttctttaccttaacatctataattctgtatatgtagtttggtttttaaattctgcaatcctt |
37814598 |
T |
|
| Q |
201 |
gttggtttcttttcgtttt |
219 |
Q |
| |
|
||||||||||||||||||| |
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| T |
37814597 |
gttggtttcttttcgtttt |
37814579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 63 - 276
Target Start/End: Complemental strand, 37809886 - 37809677
Alignment:
| Q |
63 |
caccaattcaaggagacaattttcatatatacgagttttgattatttgcagaaaaaggtacctttacttcttaattttctttaccttaacatctataatt |
162 |
Q |
| |
|
|||||| ||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37809886 |
caccaactcaaggagacaattttcatatgt----ggtttgattatttgcagaaaaaggtacctttacttcttaattttctttaccttaacatctataatt |
37809791 |
T |
|
| Q |
163 |
ctatatatgtagtttggtttttaaattctgcaatccttgttggtttcttttcgttttggttccttttagtgcataaggattgttgtgcagttgcaaaatc |
262 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| || |||| |
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| T |
37809790 |
ctatatatgtagtttggtttttaaattttgcaatcgttgttggtttcttttcattttggttccttttagtgcataaggaatgtcgtgcagtctcagaatc |
37809691 |
T |
|
| Q |
263 |
agtcagaaaagagt |
276 |
Q |
| |
|
||||| |||||||| |
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| T |
37809690 |
agtcaaaaaagagt |
37809677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 391 - 513
Target Start/End: Complemental strand, 37645852 - 37645731
Alignment:
| Q |
391 |
aatcttttaaataaaatttgggagaagattttctttgtttctttgagagtatcgatttgtttgagttgctcaagcttatagctccaccaaaataaactgg |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||| |
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| T |
37645852 |
aatcttttaaataaaatttgggagaagattttctttgtttctttgagagtatcgatttgtttgtgttgctcaaggttatagctccaccaaaat-aactgg |
37645754 |
T |
|
| Q |
491 |
ctgttatcgttcataacattcat |
513 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
37645753 |
ctgttatcgttcataacattcat |
37645731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 120 - 276
Target Start/End: Original strand, 37635762 - 37635919
Alignment:
| Q |
120 |
gtacctttacttcttaattttctttaccttaacatctataattctatatatgtagtttggtttttaaattctgcaatccttgttggtttcttttcgtttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
37635762 |
gtacctttacttcttaattttctttaccttgacatctatagttctatac--gtagttgggtttttaaattctgcaatctctgttggtttcttttcgtttt |
37635859 |
T |
|
| Q |
220 |
---ggttccttttagtgcataaggattgttgtgcagttgcaaaatcagtcagaaaagagt |
276 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||| | ||||||| |||||||| |
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|
| T |
37635860 |
tttggttccttttagtgcataaggaatgtcgtgcagttgcagattcagtcacaaaagagt |
37635919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 37814547 - 37814483
Alignment:
| Q |
292 |
tgtgatactagggatcgaaagtgttctaagagagtttgattaaaaatcttgatgctagagtttgg |
356 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
37814547 |
tgtgatactagggattgaaagtgttctcagagagtttgattaagaatcttgatgctagagtttgg |
37814483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 292 - 356
Target Start/End: Original strand, 37646296 - 37646360
Alignment:
| Q |
292 |
tgtgatactagggatcgaaagtgttctaagagagtttgattaaaaatcttgatgctagagtttgg |
356 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
37646296 |
tgtgatactatggattgaaagtgttctcagagagtttgattaagaatcttgatgctagagtttgg |
37646360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 544 - 605
Target Start/End: Complemental strand, 37645669 - 37645608
Alignment:
| Q |
544 |
atttataatcaaacagccacctttattgtaaaattcaaggttaaccctaaattcaattttta |
605 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
37645669 |
atttataatgaaacagccacctttgttgtaaaattcaagtttaaccctaaattcaagtttta |
37645608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 275 - 342
Target Start/End: Original strand, 37635950 - 37636017
Alignment:
| Q |
275 |
gtattggttaaccaaactgtgatactagggatcgaaagtgttctaagagagtttgattaaaaatcttg |
342 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| ||||||| ||| ||||||||||| ||||||| |
|
|
| T |
37635950 |
gtattggttaaccagactatgatactagggatccaaagtgtggccagatagtttgattaagaatcttg |
37636017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 37812154 - 37812108
Alignment:
| Q |
11 |
aaaatagattgtattttggctttgcaa-gcaagcatccttctaggtt |
56 |
Q |
| |
|
|||||| |||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37812154 |
aaaataaattgaattttggctttgcaaggcaagcatccttctaggtt |
37812108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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