View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21008_high_10 (Length: 364)
Name: NF21008_high_10
Description: NF21008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21008_high_10 |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: scaffold0190 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 13560 - 13696
Alignment:
| Q |
1 |
cgtgagttaacatatgcatgtgttaatcatgccttagttaattcacgcagtgtgactttagtcacacaagtgtaaaacactgtgtgagttaattcacgtc |
100 |
Q |
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| T |
13560 |
cgtgagttaacatacgcatgtgttaatcatgtcttagttaattcacgcagtgtgacttaagtcacgcaagtgtaaaacactgcgtgagttaattcacgtc |
13659 |
T |
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| Q |
101 |
tagtctatgcaacatgccaaaactggtagagacctct |
137 |
Q |
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| T |
13660 |
tagtctatgcaacatgctaaaactggtagagacctct |
13696 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 24504170 - 24504116
Alignment:
| Q |
38 |
ttaattcacgcagtgtgactttagtcacacaagtgtaaaacactgtgtgagttaa |
92 |
Q |
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| T |
24504170 |
ttaactcacgcagtgtggcttaagtcacgcaagtgtaaaacactttgtgagttaa |
24504116 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 26654447 - 26654383
Alignment:
| Q |
34 |
ttagttaattcacgcagtgtgactttagtcacacaagtgtaaaacactgtgtgagttaattcacg |
98 |
Q |
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| T |
26654447 |
ttagttaactaacgcggcgtgacttaagtcacgcaagtgaaaaacactgtgtgagttaactcacg |
26654383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 26926032 - 26925968
Alignment:
| Q |
34 |
ttagttaattcacgcagtgtgactttagtcacacaagtgtaaaacactgtgtgagttaattcacg |
98 |
Q |
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| T |
26926032 |
ttagttaactaacgcggcgtgacttaagtcacgcaagtgaaaaacactgtgtgagttaactcacg |
26925968 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 19199988 - 19199906
Alignment:
| Q |
53 |
tgactttagtcacacaagtgtaaaacactgtgtgagttaattcacgtctagtctatgcaacatgccaaaactggtagagacct |
135 |
Q |
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| T |
19199988 |
tgacttaagtcacgtaagtgtaaaacactgcgtgagttaactcacgcccagtctttgcagcaagccagaactagcagagacct |
19199906 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 12067964 - 12067931
Alignment:
| Q |
65 |
cacaagtgtaaaacactgtgtgagttaattcacg |
98 |
Q |
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| T |
12067964 |
cacaagtgtaaaacactgtgtgagttaactcacg |
12067931 |
T |
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