View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21008_high_12 (Length: 335)
Name: NF21008_high_12
Description: NF21008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21008_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 41022273 - 41022591
Alignment:
| Q |
1 |
caagttcattaatctgtctaaccaaaactttcttcacaacacatgcttggaagtttgaatttcttgatgaaaaatggggcgaaaaaccactattctggta |
100 |
Q |
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| T |
41022273 |
caagttcattaatctgtctaaccaaaactttcttcacaacacatgcttggaagtttgaatttcttgatgaaaaatggggcgaaaaaccactattctggta |
41022372 |
T |
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| Q |
101 |
taactccatgaaacattcgatgatatactcatgcatgatggtaatgtcaaaaagttggtcagtcaatccattcacttcatcaaaagtggatgaagaatcc |
200 |
Q |
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| T |
41022373 |
taactccatgaaacattcgatgatatactcatgcatgatggtactgtcaaaaaattggtcagtcaatccattcacttcatcaaaagtggatgaagaatcc |
41022472 |
T |
|
| Q |
201 |
atcaataagtttgataaatggctcttcataggttcatcacatttcaagctgaaagtctgcagaacttcacttatgatatcctttgagttgttcattggat |
300 |
Q |
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| T |
41022473 |
atcaataagtttgataaatggctcttcataggttcatcacatttcaagctgaaagtctgcagaacttcacttatgatatcctttgacttgttcattggat |
41022572 |
T |
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| Q |
301 |
ccaaagaggatgttataag |
319 |
Q |
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| T |
41022573 |
ccaaagaggatgttataag |
41022591 |
T |
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