View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21008_high_21 (Length: 238)
Name: NF21008_high_21
Description: NF21008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21008_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 10441381 - 10441606
Alignment:
| Q |
1 |
tacttaatagagtgatttgaatggttttcttgttaagtattgctcaaattcaggttcttggtgcaactgatgtattttgggg-cctttgtatattatttt |
99 |
Q |
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|||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10441381 |
tacttaatagagtgatgtgtatggttttctagttaagtattgctcaaattcaggttcttggtgcaactgatgtattttgggggcctttgtatattatttt |
10441480 |
T |
|
| Q |
100 |
ccttttacttctacaaaattctcctttttaggttgatcatattctttttaataggtgatttgctttataaaactctcgccaagaagattgattctcatct |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10441481 |
ccttttacttctacaaaattctcctttttaggttgatcatattctttttaataggtgattttctttataaaactctcgccaagaagattgattctcatct |
10441580 |
T |
|
| Q |
200 |
gttctcattaaacattcatctacttg |
225 |
Q |
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|||||||||||||||||||||||||| |
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| T |
10441581 |
gttctcattaaacattcatctacttg |
10441606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 9993054 - 9992897
Alignment:
| Q |
1 |
tacttaatagagtgatttgaatggttttcttgttaagtattgctcaaattcaggttcttggtgcaactgatgtattttgggg--cctt---tgtatatta |
95 |
Q |
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||||||||||| |||| || ||||||||| | || | ||||| ||||||| | |||||||||||||||||| |||||||||| |||| | ||||||| |
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| T |
9993054 |
tacttaatagattgatgtgtatggttttcattttcaatattggtcaaatttaagttcttggtgcaactgatttattttgggggtccttcaatttatatta |
9992955 |
T |
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| Q |
96 |
ttttccttttacttctacaaaattctcct-----ttttaggttgatcatattcttttta |
149 |
Q |
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| || ||||| ||| ||| |||||||||| ||||||||||||||||||||||||| |
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| T |
9992954 |
tctttctttttcttttac-aaattctcctttttattttaggttgatcatattcttttta |
9992897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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