View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21008_high_6 (Length: 443)
Name: NF21008_high_6
Description: NF21008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21008_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 6 - 441
Target Start/End: Complemental strand, 18230825 - 18230390
Alignment:
| Q |
6 |
agtaacaaaattttgtgtccatgcttttgcatcttggacagggaacaattacgtttggtttcattggagatttctcttgtgacatatcactttgttcatc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18230825 |
agtaacaaaattttgtgtccatgcttttgcatcttggacagggaacaattacgtcttgtttcattggagatttctcttgtgacatatcactttgttcatc |
18230726 |
T |
|
| Q |
106 |
aatcttatgggaattcagttcagaagtttctgtttcggacgagggagattttgggttctcaacatggcttgaaggtgtgtgagattttgaatcctctgta |
205 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18230725 |
aatcttatgggaattcagttcagaagtttctgtttccgacgagggagattttgggttctcaacatggcttgaaggtgtgtgagattttgaatcctctgta |
18230626 |
T |
|
| Q |
206 |
gtttggaatgaggcgtcatcctcttgaactgatgtgagttctttccttgatgtttcctgcaattggcatatagcagttagattgaattaaatatgagcaa |
305 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
18230625 |
gtttggaatgaggcctcatcctcttgaactgatgtgagttctttccttgatgtttcctgcaattggtatatagcagttagattgaattaaataggagcaa |
18230526 |
T |
|
| Q |
306 |
cacaattatactgatttatgaattgacattataaagctatgaaatattgacatagacatgggaatcgagtacgacactcccaccgatattaatttgagaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18230525 |
cacaattatactgatttatgaattgacattataaagctatgaaatattgacatagacatgggaatcgagtacgacactcccaccgatattaatttgagaa |
18230426 |
T |
|
| Q |
406 |
ctgcgtgaaatattgaatgtaaatacatgtatcagt |
441 |
Q |
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| T |
18230425 |
ctgcgtgaaatattgaatgtaaatacatgtatcagt |
18230390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 6 - 348
Target Start/End: Complemental strand, 18198199 - 18197865
Alignment:
| Q |
6 |
agtaacaaaattttgtgtccatgcttttgcatcttggacagggaacaattacgtttggtttcattggagatttctcttgtgacatatcactttgttcatc |
105 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||||| ||||||| | || ||||||| |||||||||| ||||||||||||||| |||||||||| |
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| T |
18198199 |
agtagcaaaattttgtgtccgtgcttttgcatcttggacatggaacaacttggtctggtttctttggagatttttcttgtgacatatcagtttgttcatc |
18198100 |
T |
|
| Q |
106 |
aatcttatgggaattcagttcagaagtttctgtttcggacgagggagattttgggttctcaacatggcttgaaggtgtgtgagattttgaatcctctgta |
205 |
Q |
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||| ||| |||||| || ||| || |||||||| || ||||||| ||| |||||||| | | ||||||||| |||| |||||| |||||||||||| |
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| T |
18198099 |
aattttagtggaatttgcttgagacgtctctgtttcagatgagggagttttcgggttctcgataaggcttgaagatgtgggagattctgaatcctctgtg |
18198000 |
T |
|
| Q |
206 |
gtttggaatgaggcgtcatcctcttgaactgatgtgagttctttccttgatgtttcctgcaattggcatatagcagttagat-tgaattaaatatgagca |
304 |
Q |
| |
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||||||||||| || |||||||| || |||||||||| |||||||||||||| | ||| ||||||||||||||| ||| |||||||||| |
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| T |
18197999 |
gtttggaatgaagcctcatcctc--ga-------tgagttcttttcttgatgtttcctgaagttgatatatagcagttagatatgaccaaaatatgagcc |
18197909 |
T |
|
| Q |
305 |
acacaattatactgatttatgaattgacattataaagctatgaa |
348 |
Q |
| |
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||| | || || || ||||| |||||||| |||||||||||||| |
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|
| T |
18197908 |
acaaagttttattggtttataaattgacagtataaagctatgaa |
18197865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 18188179 - 18188130
Alignment:
| Q |
6 |
agtaacaaaattttgtgtccatgcttttgcatcttggacagggaacaatt |
55 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
18188179 |
agtaacaaaattttgtgtccatgcttttgcatcttggacatggaagaatt |
18188130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 18193420 - 18193376
Alignment:
| Q |
6 |
agtaacaaaattttgtgtccatgcttttgcatcttggacagggaa |
50 |
Q |
| |
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||||||||||||||||||| | |||||||||||||||||| |||| |
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| T |
18193420 |
agtaacaaaattttgtgtctacgcttttgcatcttggacatggaa |
18193376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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