View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21008_high_9 (Length: 380)
Name: NF21008_high_9
Description: NF21008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21008_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 33958383 - 33958740
Alignment:
| Q |
19 |
gatatgcaatcaacttatttctttgggatattttgattggagctgagtattgcaaagagtacttagcaccttcagtaataaagaggacaaatcgagggag |
118 |
Q |
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| T |
33958383 |
gatatgcaatcaacttatttctttgggatattttgattggagctgagtattgcaaagagtacttagcaccttcagtaataaagaggacaaatcgagggag |
33958482 |
T |
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| Q |
119 |
tgaaattcatatgagctcttattgcaattttgtggtgtgggagggccttgaaaag-------agtttaatgtgatgccatttcttttaatatataacaaa |
211 |
Q |
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| T |
33958483 |
tgaaattcatatgagctcttattgcaattttgtggtgtgggagggccttgaaaagaatttaaagtttaatgtgatgccatttcttttaatatataacaaa |
33958582 |
T |
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| Q |
212 |
taacatttaataattgctaatctggtaatgaacataacgttctattattgtgacatgcctcttttgcacaccattcattttaccttatgnnnnnnnnngg |
311 |
Q |
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| T |
33958583 |
taacatttaataattgctaatctggtaatgaacataacgttctattattgtgacatgcctcttttgcacaccattcattttaccttatg-ttttttttgg |
33958681 |
T |
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| Q |
312 |
ggggaaattgggttaggagaactggaaaacaaaagataatagtacgtgcgttttttcat |
370 |
Q |
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| T |
33958682 |
gggaaaattgggttaggagaactggaaaacaaaagataatagtacgtgccttttttcat |
33958740 |
T |
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