View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21008_low_10 (Length: 427)
Name: NF21008_low_10
Description: NF21008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21008_low_10 |
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| [»] scaffold0014 (2 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 111 - 414
Target Start/End: Complemental strand, 90628 - 90327
Alignment:
| Q |
111 |
gttgcttgatagcttgtgaacctgaaatcatcattttcagcacttggatttcaatactgctgtcttctcttggatttcaatgctgttgatgttcttcatt |
210 |
Q |
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| T |
90628 |
gttgcttgatagcttgtgaacctgaaatcatcgttttcagcacttggatttcaatactgccgtcttctcttggatttcaatgctgttgatgttcttcatt |
90529 |
T |
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| Q |
211 |
cagcaatgcacaacacgagtttataaaatcgtattccttcggatgatttccagttttcttaaagttttgatgcataaattagtaaatcttttcagtggtt |
310 |
Q |
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| T |
90528 |
cagcaatgcacaacacgagtttataaaatcatattccttcggatgatttccagtttt----aagttttgatacataaattagtaaatcttttcagtggtt |
90433 |
T |
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| Q |
311 |
acatatttttgtatctcatgtattcccatccggaatttctcttcaacggcagaactgcaactc--gtctctgaagagtcatcatccttcacttaagtcct |
408 |
Q |
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| T |
90432 |
acatatttttgtatctcatgaattcccatccggaatttctcttcaacagcagaactgcaactcttgtctctgaagagtcatcatccttcacttaagtcct |
90333 |
T |
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| Q |
409 |
ttgttc |
414 |
Q |
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| T |
90332 |
ttgttc |
90327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 90675 - 90629
Alignment:
| Q |
21 |
gactgtgaaacatcacagaagtagcgtagtactgtggcaacttctcc |
67 |
Q |
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| T |
90675 |
gactgtgaaacatcacagaagtagcgtagtactgtggcaacttctcc |
90629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 28 - 328
Target Start/End: Original strand, 6622902 - 6623204
Alignment:
| Q |
28 |
aaacatcacagaagtagcgtagtactgtggcaacttctccaaatgttagacatt-ccaaaccgtattttcacgcgtgaaacttggttgcttgatagcttg |
126 |
Q |
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| T |
6622902 |
aaacatcacagaagtagcgtagtactacagcaacttctccaaatgttagacatttccaaaccgtattttcaagcttagaacttggttgcttgaaagcttc |
6623001 |
T |
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| Q |
127 |
tgaacctgaaatcatcattttcagcacttggatttcaatactgctgtcttctcttggatttcaatgctgttgatgttcttcattcagcaatgcacaacac |
226 |
Q |
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| T |
6623002 |
tgaacctgaaatcataattttcagcacttgaatatcaatactgttgtcttctcttggatttcaatgctgttgaagttcttcattcagcaacgcacaacac |
6623101 |
T |
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| Q |
227 |
gagtttataaaatcgtattccttcggatgatttccagttttcttaaagttttgatgcataaattagtaaatctttt-cagtggttacatatttttgtatc |
325 |
Q |
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| T |
6623102 |
gagtttataaaatcgtattcatattgataatttccagttttcttgaagttttgatacataaattagtaaatcttttgcagtggttacatatttttgtatc |
6623201 |
T |
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| Q |
326 |
tca |
328 |
Q |
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||| |
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| T |
6623202 |
tca |
6623204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 326 - 413
Target Start/End: Original strand, 6623256 - 6623345
Alignment:
| Q |
326 |
tcatgtattcccatccggaatttctcttcaacggcagaactgcaactc--gtctctgaagagtcatcatccttcacttaagtcctttgtt |
413 |
Q |
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| T |
6623256 |
tcatgaattcccctcctgaatttctcttcagcagcagaattgcaactcttgtctctgaagagtcatcgtccttcacttaagtcctttgtt |
6623345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 13747467 - 13747516
Alignment:
| Q |
105 |
aacttggttgcttgatagcttgtgaacctgaaatcatcattttcagcact |
154 |
Q |
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| T |
13747467 |
aacttggctgcttgatagcttgtgaacctaaagtcatcatcttcagcact |
13747516 |
T |
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