View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21008_low_12 (Length: 364)

Name: NF21008_low_12
Description: NF21008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21008_low_12
NF21008_low_12
[»] scaffold0190 (1 HSPs)
scaffold0190 (1-137)||(13560-13696)
[»] chr7 (1 HSPs)
chr7 (38-92)||(24504116-24504170)
[»] chr5 (2 HSPs)
chr5 (34-98)||(26654383-26654447)
chr5 (34-98)||(26925968-26926032)
[»] chr3 (1 HSPs)
chr3 (53-135)||(19199906-19199988)
[»] chr1 (1 HSPs)
chr1 (65-98)||(12067931-12067964)


Alignment Details
Target: scaffold0190 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 13560 - 13696
Alignment:
Q  1 cgtgagttaacatatgcatgtgttaatcatgccttagttaattcacgcagtgtgactttagtcacacaagtgtaaaacactgtgtgagttaattcacgtc 100  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||    
T  13560 cgtgagttaacatacgcatgtgttaatcatgtcttagttaattcacgcagtgtgacttaagtcacgcaagtgtaaaacactgcgtgagttaattcacgtc 13659  T
Q  101 tagtctatgcaacatgccaaaactggtagagacctct 137  Q
    ||||||||||||||||| |||||||||||||||||||    
T  13660 tagtctatgcaacatgctaaaactggtagagacctct 13696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 24504170 - 24504116
Alignment:
Q  38 ttaattcacgcagtgtgactttagtcacacaagtgtaaaacactgtgtgagttaa 92  Q
    |||| |||||||||||| ||| |||||| ||||||||||||||| ||||||||||    
T  24504170 ttaactcacgcagtgtggcttaagtcacgcaagtgtaaaacactttgtgagttaa 24504116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 26654447 - 26654383
Alignment:
Q  34 ttagttaattcacgcagtgtgactttagtcacacaagtgtaaaacactgtgtgagttaattcacg 98  Q
    |||||||| | |||| | ||||||| |||||| |||||| ||||||||||||||||||| |||||    
T  26654447 ttagttaactaacgcggcgtgacttaagtcacgcaagtgaaaaacactgtgtgagttaactcacg 26654383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 26926032 - 26925968
Alignment:
Q  34 ttagttaattcacgcagtgtgactttagtcacacaagtgtaaaacactgtgtgagttaattcacg 98  Q
    |||||||| | |||| | ||||||| |||||| |||||| ||||||||||||||||||| |||||    
T  26926032 ttagttaactaacgcggcgtgacttaagtcacgcaagtgaaaaacactgtgtgagttaactcacg 26925968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 19199988 - 19199906
Alignment:
Q  53 tgactttagtcacacaagtgtaaaacactgtgtgagttaattcacgtctagtctatgcaacatgccaaaactggtagagacct 135  Q
    |||||| ||||||  ||||||||||||||| ||||||||| ||||| | ||||| |||| || |||| |||| | ||||||||    
T  19199988 tgacttaagtcacgtaagtgtaaaacactgcgtgagttaactcacgcccagtctttgcagcaagccagaactagcagagacct 19199906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 12067964 - 12067931
Alignment:
Q  65 cacaagtgtaaaacactgtgtgagttaattcacg 98  Q
    |||||||||||||||||||||||||||| |||||    
T  12067964 cacaagtgtaaaacactgtgtgagttaactcacg 12067931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University