View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21008_low_13 (Length: 360)
Name: NF21008_low_13
Description: NF21008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21008_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 41022288 - 41021955
Alignment:
| Q |
1 |
cagattaatgaacttgttaaccttcactttttccaccatccatcaccaataacattacaacagcttgttgaaagggacttggccagacgcgaatcatgga |
100 |
Q |
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| T |
41022288 |
cagattaatgaacttgttaaccttcactttttccatcatccatcaccaataacattacaacagcttgttgaaagggacttggccagacgcgaatcatgga |
41022189 |
T |
|
| Q |
101 |
tgaatatccataatgatgcagaagaaattgcaatggaggtggagaaaaatgttttggaaacactggttttggaaatcgtgtctgagatgaatatatcata |
200 |
Q |
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| T |
41022188 |
tgaatatccataatgatgcagaagaaattgcaatggaggtggagaaaaatgttttggaaacactggttttggaaatcgtgtctgagatgaatatatcata |
41022089 |
T |
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| Q |
201 |
gaagtgatacattgcattgaacttaggttccatggaagatagaaatagaatgtcttgttttatttctagctacatttaacattcatctcactatcactta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41022088 |
gaagtgatacattgcattgaacttaggttccatggaagatagaaatagaatgtcttgttttatttctagctacatttaacattcatctcactatcactta |
41021989 |
T |
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| Q |
301 |
gaaacaattgttcattttacaaactatttaaaat |
334 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
41021988 |
gaaacaattgttcattttacaaactatttaaaat |
41021955 |
T |
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