View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21008_low_15 (Length: 319)

Name: NF21008_low_15
Description: NF21008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21008_low_15
NF21008_low_15
[»] chr4 (7 HSPs)
chr4 (18-305)||(35253196-35253505)
chr4 (100-194)||(35241041-35241135)
chr4 (88-200)||(35283327-35283439)
chr4 (18-193)||(35271064-35271242)
chr4 (88-200)||(35277813-35277928)
chr4 (93-199)||(35246664-35246773)
chr4 (100-191)||(35286869-35286963)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 35253196 - 35253505
Alignment:
Q  18 atgatacacaacttatatatgatatgtgaagctcacctgaagttggtcaataacaaccatagtcggagtatcaattatggtaataacatttcgattagca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35253196 atgatacacaacttatatatgatatgtgaagctcacctgaagttggtcaataacaaccatagtcggagtatcaattatggtaataacatttcgattagca 35253295  T
Q  118 actgccaaaagcttccctgatccaggctgaaatctcactaggcttcctgtctgaaattcatttttatacaagtcattttactccgtgattctgttttgaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35253296 actgccaaaagcttccctgatccaggctgaaatctcactaggcttcctgcctgaaattcatttttatacaagtcattttactctgtgattctgttttgaa 35253395  T
Q  218 tactataaaag----------------------atgagtttaagactaaccttaaattcgttaactatgacattcttatggagatcccatactttaatta 295  Q
    |||| ||||||                      |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35253396 tactttaaaagatgagttttgaatactgcaaaaatgagtttaagactaaccttaaattcgttaactaagacattcttatggagatcccatactttaatta 35253495  T
Q  296 catcacaggt 305  Q
    ||||||||||    
T  35253496 catcacaggt 35253505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 100 - 194
Target Start/End: Original strand, 35241041 - 35241135
Alignment:
Q  100 ataacatttcgattagcaactgccaaaagcttccctgatccaggctgaaatctcactaggcttcctgtctgaaattcatttttatacaagtcatt 194  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35241041 ataacattttgattagctactgccaaaagcttccctgatccaggctgaaatctcactaggcttcctgcctgaaattcatttttatacaagtcatt 35241135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 35283327 - 35283439
Alignment:
Q  88 tcaattatggtaataacatttcgattagcaactgccaaaagcttccctgatccaggctgaaatctcactaggcttcctgtctgaaattcatttttataca 187  Q
    |||| |||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |    
T  35283327 tcaagtatggtgataacattttgattagcgactgccaaaagcttccctgatccaggctgaaatctcactaggcttcctgcctgaaattcatttttacata 35283426  T
Q  188 agtcattttactc 200  Q
    ||||||| |||||    
T  35283427 agtcattgtactc 35283439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 35271064 - 35271242
Alignment:
Q  18 atgatacacaacttatatatgatatgtgaagctcacctgaagttggtcaataacaaccatagtcggagtatcaattatggtaataacatttcgattagca 117  Q
    |||||||||| |||||||||||||||||||||||||||||| || ||  | ||||  || |  | |||||| || |||||| ||||||||| ||||||||    
T  35271064 atgatacacagcttatatatgatatgtgaagctcacctgaaatttgtggaaaacactcaaatcctgagtattaaatatggttataacattttgattagca 35271163  T
Q  118 actgccaaaagcttccctgatccaggctgaaatctcactaggctt---cctgtctgaaattcatttttatacaagtcat 193  Q
    |||||||||| | |||| ||||||||||||||||||||| | |||   |||  ||||||||||| ||||||||||||||    
T  35271164 actgccaaaaacgtcccagatccaggctgaaatctcacttgccttccaccttcctgaaattcatgtttatacaagtcat 35271242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 35277813 - 35277928
Alignment:
Q  88 tcaattatggtaataacatttcgattagcaactgccaaaagcttccctgatccaggctgaaatctcactaggctt---cctgtctgaaattcatttttat 184  Q
    |||| |||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||| |   |||  |||||||||||||||||    
T  35277813 tcaagtatggtaacaacattttgattagcaactgccaaaagcttcccagatccaggctgaaatctcactgggcatccaccttcctgaaattcatttttat 35277912  T
Q  185 acaagtcattttactc 200  Q
    |||||||||| |||||    
T  35277913 acaagtcattgtactc 35277928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 35246664 - 35246773
Alignment:
Q  93 tatggtaataacatttcgattagcaactgccaaaagcttccctgatccaggctgaaatctcactaggctt---cctgtctgaaattcatttttatacaag 189  Q
    |||||| ||||||||| ||||||||||||||||| || |||| |||||||||||||||||||||||||||   |||| ||| ||||||||||||||||||    
T  35246664 tatggtgataacattttgattagcaactgccaaatgcctcccagatccaggctgaaatctcactaggcttccacctgcctgcaattcatttttatacaag 35246763  T
Q  190 tcattttact 199  Q
    ||||| ||||    
T  35246764 tcattgtact 35246773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 100 - 191
Target Start/End: Original strand, 35286869 - 35286963
Alignment:
Q  100 ataacatttcgattagcaactgccaaaagcttccctgatccaggctgaaatctcactaggctt---cctgtctgaaattcatttttatacaagtc 191  Q
    ||||||||| |||||||||||||||||||| |||| ||| ||||||||||||||||| ||| |   |||| |||||||||||||||||| |||||    
T  35286869 ataacattttgattagcaactgccaaaagcatcccagatacaggctgaaatctcacttggcctacacctgcctgaaattcatttttatataagtc 35286963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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