View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21008_low_16 (Length: 291)
Name: NF21008_low_16
Description: NF21008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21008_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 20882137 - 20882401
Alignment:
| Q |
13 |
aatataacatttattaactatatcatgaatgatggcaatctgattacttcaatctaatccaaactggttttttccatttttccaccaactagttacttga |
112 |
Q |
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| T |
20882137 |
aatataacatttattaactatatcatgaatgatggtaatctgattacttcaatctaatccaaactggttttttccgtttttccaccaactagttatttga |
20882236 |
T |
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| Q |
113 |
tcaacagtggtagaaaaaataaaattgtatagtttctattggacaagaagtgccataccaaattaagtaaattggagtgtctgttgtcgaaatgttgatc |
212 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20882237 |
tcaacaatggtagaaaaaataaaattgtatagtttctattggacaagaagcgtcataccaaattaagtaaattggagtgtctgttgtcgaaatgttgatc |
20882336 |
T |
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| Q |
213 |
aagatgtttctcttcgtagaaagttttcttacagtatccacactgccattcatttatatctatat |
277 |
Q |
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| T |
20882337 |
aagatgtttctcttcgtagaaagttttcttacagtatccacactgccattcatttatatctatat |
20882401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 15466229 - 15466484
Alignment:
| Q |
13 |
aatataacatttattaactatatcatgaatgatggcaatctgattacttcaatctaatccaaactggttttttccatttttccaccaactagttacttga |
112 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| |
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| T |
15466229 |
aatataacatttattaaatatatcatgaatgatggcaatctgattacttcaatctaatccaaatgggttttttccgattttccaccaactagttatttga |
15466328 |
T |
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| Q |
113 |
tcaacagtggtagaaaaaataaaattgtatagtttctattggacaagaagtgccataccaaattaagtaaattggagtgtctgttgtcgaaatgttgatc |
212 |
Q |
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|||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15466329 |
tcaacaatggtagaaaaaatagaattgtat---------tggacaagaagcatcataccaaattaagtaaattggagtgtctgttgtcgaaatgctgatc |
15466419 |
T |
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| Q |
213 |
aagatgtttctcttcgtagaaagttttcttacagtatccacactgccattcatttatatctatat |
277 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15466420 |
aagatgtttctcttcgtcgaaagttttcttacactatccacactgccattcatttatatctatat |
15466484 |
T |
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