View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21008_low_17 (Length: 266)
Name: NF21008_low_17
Description: NF21008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21008_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 41546516 - 41546268
Alignment:
| Q |
1 |
aaagtcaggtctagtcatgttaaggatgtcgcgaaaaccaaagtcaggtctagtgatagacttagaaaattgaaaaccaagatgattgctggtctaggca |
100 |
Q |
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| T |
41546516 |
aaagtcaggtctagtcatgttaaggatgtcgcgaaaaccaaagtcaggtctagtgatagacttagaaaattgaaaaccaagatgattgctggtctaggca |
41546417 |
T |
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| Q |
101 |
aagatgcaagcagcccatttgtaattgaagacagtgatgagggtgatggtattgataaaggtgatggtattgatgattaaccagagagaccaaaagattg |
200 |
Q |
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| T |
41546416 |
aagatgcaagcagcccatttgtaattgaagacagtgatgagggtgatggtattgataaaggtgatggtattgatgattaaccagagagaccaaaagattg |
41546317 |
T |
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| Q |
201 |
gtccatgcatgcaggcaattaggacactgaagacttcatatgacattag |
249 |
Q |
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| T |
41546316 |
gtccatgcatgcaggcaattaggacactgaagacttcatatgacattag |
41546268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 41546555 - 41546502
Alignment:
| Q |
1 |
aaagtcaggtctagtcatgttaaggatgtcgcgaaaaccaaagtcaggtctagt |
54 |
Q |
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| T |
41546555 |
aaagtcaggtctagtcatgttaaggatgtcaagaaagccaaagtcaggtctagt |
41546502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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