View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21008_low_18 (Length: 262)
Name: NF21008_low_18
Description: NF21008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21008_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 25484068 - 25484326
Alignment:
| Q |
15 |
agaaagaactggtgtctgcaatatacattgtagtctttatatagttgaaataattaattagatgcattttcatatatagggacaatgtataa-------- |
106 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25484068 |
agaaagaactggtgtctgcaatattcattgtagtctttatatagttgaaataattaattagatgcattttcatatatagggacaatgtataagctgtttg |
25484167 |
T |
|
| Q |
107 |
-------------gctgtttggtcctatgaataagctgtttggtctgccaagagagggaggtacagcttctagttcttctacagattctaatagcaacca |
193 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25484168 |
gtcctatgaataagctgtttggtcctatgaataagatgtttggtctgccaagagagggaggtacagcttctagttcttctacagattctaatagcaacca |
25484267 |
T |
|
| Q |
194 |
aagctatagatacgatgtgttcatcagtttcagaggttctgacacccgtaattcctttg |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25484268 |
aagctatagatacgatgtgttcatcagtttcagaggttctgacacccgtaattcctttg |
25484326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 25442322 - 25442375
Alignment:
| Q |
199 |
atagatacgatgtgttcatcagtttcagaggttctgacacccgtaattcctttg |
252 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||| |||||||||| |
|
|
| T |
25442322 |
atagatacgatgtgttcatcagttttagaggtcctgacacccgcaattcctttg |
25442375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 25436604 - 25436513
Alignment:
| Q |
161 |
ttctagttcttctacagattctaatagcaaccaaagctatagatacgatgtgttcatcagtttcagaggttctgacacccgtaattcctttg |
252 |
Q |
| |
|
|||||||||||| | ||||| | ||||| | ||| | ||| ||||||||||||||||||||| ||||||||||| ||||| ||||| |||| |
|
|
| T |
25436604 |
ttctagttcttccaaagattatggtagcatcgaaaaccataaatacgatgtgttcatcagttttagaggttctgagacccgcaattcttttg |
25436513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 25479049 - 25478993
Alignment:
| Q |
198 |
tatagatacgatgtgttcatcagtttcagaggttctgacacccgtaattcctttgct |
254 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
25479049 |
tatagatacgacgtgtttatcagtttcagaggtattgacacccgtaaaacctttgct |
25478993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 500444 - 500392
Alignment:
| Q |
186 |
agcaaccaaagctatagatacgatgtgttcatcagtttcagaggttctgacac |
238 |
Q |
| |
|
|||| ||||||||||||||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
500444 |
agcatccaaagctatagatatgatgtgtttatcagtttcagaggttccgacac |
500392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 35184068 - 35184004
Alignment:
| Q |
177 |
gattctaatagcaaccaaagctatagatacgatgtgttcatcagtttcagaggttctgacacccg |
241 |
Q |
| |
|
||||| ||||||| ||||||||||||||| |||||||| ||||||||| | ||| |||||||||| |
|
|
| T |
35184068 |
gattccaatagcatccaaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccg |
35184004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 35169760 - 35169712
Alignment:
| Q |
196 |
gctatagatacgatgtgttcatcagtttcagaggttctgacacccgtaa |
244 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
35169760 |
gctataaatacgatgtgtttatcagtttcagaggcgctgacacccgtaa |
35169712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 35106104 - 35106066
Alignment:
| Q |
192 |
caaagctatagatacgatgtgttcatcagtttcagaggt |
230 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
35106104 |
caaagctatagatacgacgtgtttatcagtttcagaggt |
35106066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University