View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21008_low_2 (Length: 720)
Name: NF21008_low_2
Description: NF21008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21008_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 390 - 707
Target Start/End: Original strand, 37814996 - 37815312
Alignment:
| Q |
390 |
aatcttttaaataaaatttgggagaagattttctttgtttctttgagagtatcgatttgtttgagttgctcaagcttatagctccaccaaaataaactgg |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| |
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| T |
37814996 |
aatcttttaaataaaatttgggagaagattttctttgtttctttgagagtatcgatttgtttgtgttgctcaaggttatagctccaccaaaataa-ctgg |
37815094 |
T |
|
| Q |
490 |
ctgttatcgttcataacattcatcttaggataggttgaaataacgaaaactttatttataatcaaacagccacctttattgtaaaattcaaggttaaccc |
589 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37815095 |
ctgttatcgttcataacattcatcttaggataggttgaaacaacgaaaactttatttataatcaaacagccacctttattgtaaaattcaaggttaaccc |
37815194 |
T |
|
| Q |
590 |
taaattcaatttttaattttctaaccaattgatatgttatagaatttcttccattttcactatgaatgtttgaatggaatggttacaaattacaatcaga |
689 |
Q |
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||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37815195 |
taaattcaagttttaattttctaaccaatggatatgttatagaatttcttccattttcactatgaatgtttgaatggaatggttacaaattacaatcaga |
37815294 |
T |
|
| Q |
690 |
aattccttcagccctatg |
707 |
Q |
| |
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|||||||||||||||||| |
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| T |
37815295 |
aattccttcagccctatg |
37815312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 49 - 218
Target Start/End: Original strand, 37646095 - 37646264
Alignment:
| Q |
49 |
ctaggtttccttccaccaattcaaggagacaattttcatatatacgagttttgattatttgcagaaaaaggtacctttacttcttaattttctttacctt |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37646095 |
ctaggtttccttccaccaattcaaggagacaattttcatatatacgaggtttgattatttgcagaaaaaggtacctttacttcttaattttctttacctt |
37646194 |
T |
|
| Q |
149 |
aacatctataattctatatatgtagtttggtttttaaattctgcaatccttgttggtttcttttcgtttt |
218 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37646195 |
aacatctataattctgtatatgtagtttggtttttaaattctgcaatccttgttggtttcttttcgtttt |
37646264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 49 - 218
Target Start/End: Complemental strand, 37814748 - 37814579
Alignment:
| Q |
49 |
ctaggtttccttccaccaattcaaggagacaattttcatatatacgagttttgattatttgcagaaaaaggtacctttacttcttaattttctttacctt |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37814748 |
ctaggtttccttccaccaattcaaggagacaattttcatatatacgaggtttgattatttgcagaaaaaggtacctttacttcttaattttctttacctt |
37814649 |
T |
|
| Q |
149 |
aacatctataattctatatatgtagtttggtttttaaattctgcaatccttgttggtttcttttcgtttt |
218 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37814648 |
aacatctataattctgtatatgtagtttggtttttaaattctgcaatccttgttggtttcttttcgtttt |
37814579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 62 - 275
Target Start/End: Complemental strand, 37809886 - 37809677
Alignment:
| Q |
62 |
caccaattcaaggagacaattttcatatatacgagttttgattatttgcagaaaaaggtacctttacttcttaattttctttaccttaacatctataatt |
161 |
Q |
| |
|
|||||| ||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37809886 |
caccaactcaaggagacaattttcatatgt----ggtttgattatttgcagaaaaaggtacctttacttcttaattttctttaccttaacatctataatt |
37809791 |
T |
|
| Q |
162 |
ctatatatgtagtttggtttttaaattctgcaatccttgttggtttcttttcgttttggttccttttagtgcataaggattgttgtgcagttgcaaaatc |
261 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| || |||| |
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| T |
37809790 |
ctatatatgtagtttggtttttaaattttgcaatcgttgttggtttcttttcattttggttccttttagtgcataaggaatgtcgtgcagtctcagaatc |
37809691 |
T |
|
| Q |
262 |
agtcagaaaagagt |
275 |
Q |
| |
|
||||| |||||||| |
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|
| T |
37809690 |
agtcaaaaaagagt |
37809677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 390 - 512
Target Start/End: Complemental strand, 37645852 - 37645731
Alignment:
| Q |
390 |
aatcttttaaataaaatttgggagaagattttctttgtttctttgagagtatcgatttgtttgagttgctcaagcttatagctccaccaaaataaactgg |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||| |
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| T |
37645852 |
aatcttttaaataaaatttgggagaagattttctttgtttctttgagagtatcgatttgtttgtgttgctcaaggttatagctccaccaaaat-aactgg |
37645754 |
T |
|
| Q |
490 |
ctgttatcgttcataacattcat |
512 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
37645753 |
ctgttatcgttcataacattcat |
37645731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 119 - 275
Target Start/End: Original strand, 37635762 - 37635919
Alignment:
| Q |
119 |
gtacctttacttcttaattttctttaccttaacatctataattctatatatgtagtttggtttttaaattctgcaatccttgttggtttcttttcgtttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
37635762 |
gtacctttacttcttaattttctttaccttgacatctatagttctatac--gtagttgggtttttaaattctgcaatctctgttggtttcttttcgtttt |
37635859 |
T |
|
| Q |
219 |
---ggttccttttagtgcataaggattgttgtgcagttgcaaaatcagtcagaaaagagt |
275 |
Q |
| |
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|||||||||||||||||||||| ||| ||||||||||| | ||||||| |||||||| |
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| T |
37635860 |
tttggttccttttagtgcataaggaatgtcgtgcagttgcagattcagtcacaaaagagt |
37635919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 37646070 - 37646016
Alignment:
| Q |
1 |
aatacaatctatttttcgtttttgtttgtctatttatattaggattagctaggtt |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37646070 |
aatacaatctatttttcgtttttgtttgtctatttatattaggattagctaggtt |
37646016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 37814773 - 37814827
Alignment:
| Q |
1 |
aatacaatctatttttcgtttttgtttgtctatttatattaggattagctaggtt |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37814773 |
aatacaatctatttttcgtttttgtttgtctatttatattaggattagctaggtt |
37814827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 37814547 - 37814483
Alignment:
| Q |
291 |
tgtgatactagggatcgaaagtgttctaagagagtttgattaaaaatcttgatgctagagtttgg |
355 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
37814547 |
tgtgatactagggattgaaagtgttctcagagagtttgattaagaatcttgatgctagagtttgg |
37814483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 37646296 - 37646360
Alignment:
| Q |
291 |
tgtgatactagggatcgaaagtgttctaagagagtttgattaaaaatcttgatgctagagtttgg |
355 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
37646296 |
tgtgatactatggattgaaagtgttctcagagagtttgattaagaatcttgatgctagagtttgg |
37646360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 543 - 604
Target Start/End: Complemental strand, 37645669 - 37645608
Alignment:
| Q |
543 |
atttataatcaaacagccacctttattgtaaaattcaaggttaaccctaaattcaattttta |
604 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| ||||| |
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|
| T |
37645669 |
atttataatgaaacagccacctttgttgtaaaattcaagtttaaccctaaattcaagtttta |
37645608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 37635950 - 37636017
Alignment:
| Q |
274 |
gtattggttaaccaaactgtgatactagggatcgaaagtgttctaagagagtttgattaaaaatcttg |
341 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| ||||||| ||| ||||||||||| ||||||| |
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|
| T |
37635950 |
gtattggttaaccagactatgatactagggatccaaagtgtggccagatagtttgattaagaatcttg |
37636017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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