View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21008_low_24 (Length: 237)
Name: NF21008_low_24
Description: NF21008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21008_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 45196481 - 45196277
Alignment:
| Q |
16 |
aatattactgagaatagggtaaactctcaatatcaatattatatgagttaaaggggcatgcatatattacacattttacgctgacaaaagataaaaactc |
115 |
Q |
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| T |
45196481 |
aatattactgagaatagggtaaactctcaatatcaatgttatatgagttaaaggggcatgcatatattacacattttacactgacaaaagataaaaactc |
45196382 |
T |
|
| Q |
116 |
atcactttgtcaatctacttaaaggacttggatgacatgacatagtagttgactattattgaatgtcagtgtaaaactatgtcctttaaactcatattct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45196381 |
atcactttgtcaatctacttaaaggacttggatgacatgacatagtagttgactattattgaatgtcagtgtaaaactatgtcctttaaactcatattct |
45196282 |
T |
|
| Q |
216 |
ataac |
220 |
Q |
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||||| |
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| T |
45196281 |
ataac |
45196277 |
T |
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