View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21008_low_25 (Length: 223)
Name: NF21008_low_25
Description: NF21008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21008_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 7 - 207
Target Start/End: Original strand, 44541406 - 44541606
Alignment:
| Q |
7 |
aaggagcacagactaaaatcaatggtcaatttagagaaaa-tagtgacccatttgtcactgaaacttgaattnnnnnnntatggaaagagagaataaaat |
105 |
Q |
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| T |
44541406 |
aaggaacacaaactaaaatcaatggtcaatttagagaaaaatagtgacccatttgtcactgaaacttgaattaaaaaaatatggaaagagagaataaaat |
44541505 |
T |
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| Q |
106 |
gttgggagcactttgtgtgattcaagctgttgaaatgattatccatagttggtttgatcatgcaatttaggcagcttgtggtgggtgagtgagttataag |
205 |
Q |
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| T |
44541506 |
gttaggagcactttgtgtgattcaagctgttgaaatga-tatccatagttggtttgatcttgcaatttaggcagcttgtggtaggtgagtgagttataag |
44541604 |
T |
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| Q |
206 |
ga |
207 |
Q |
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|| |
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| T |
44541605 |
ga |
44541606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 472747 - 472937
Alignment:
| Q |
7 |
aaggagcacagactaaaatcaatggtcaatttagagaaaa-tagtgacccatttgtcactgaaacttgaattnnnnnnntatggaaagagagaataaaat |
105 |
Q |
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||||| |||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
472747 |
aaggaacacaaactaaaattaatggtcaatttagagaaaaatagtgacccatttgtcactgaaacttgaattaaaaaaatat----agagagaataaaat |
472842 |
T |
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| Q |
106 |
gttgggagcactttgtgtgattcaag-ctgttgaaatgattatccatagttggtttgatcatgcaatttaggcagcttgtggtgggtgagtgagttat |
202 |
Q |
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| T |
472843 |
gttgagagcact--gtgtgattcaaggctgttgaaataat-attcatagttggtttgatcttgcaatttaggcagctggtggtgggtgagtgagttat |
472937 |
T |
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