View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21008_low_3 (Length: 686)
Name: NF21008_low_3
Description: NF21008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21008_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 45 - 331
Target Start/End: Original strand, 41546672 - 41546958
Alignment:
| Q |
45 |
ggcaaatgcttaaatacttacatttgtaggatcaggcacataaggtattgcaactggtgcatttgcaacaggatcaacctgacttgcagaaggtgctaca |
144 |
Q |
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| T |
41546672 |
ggcaaatgcttaaatacttacatttgtaggatcaggcacataaggtattgcaactggtgcatttgcaacaggatcaacctgacttgcagaaggtgctaca |
41546771 |
T |
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| Q |
145 |
attggtgcaggtacttcgacatgaccaactggtgcagaacaatgcagtttttgagataacatttcaagcacatcatcttcaaacataatatcagctaaga |
244 |
Q |
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| T |
41546772 |
attggtgcaggtacttcgacatgaccaactggtgcagaacaatgcagtttttgagataacatttcaagcacatcatcttcaaacataatatcagctaaga |
41546871 |
T |
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| Q |
245 |
tatttgggtcaattaaataacaccctagtctaaaataatgtataaaaacagtgtaaatacacacctacataatatgatacaaaccct |
331 |
Q |
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| T |
41546872 |
tattagggtcaattaaataacaccctagtctaaaataatgtataaaaacagtgtaaatacacacctacataatatgatacaaaccct |
41546958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 433 - 677
Target Start/End: Original strand, 41547060 - 41547304
Alignment:
| Q |
433 |
caatatagtgtaaagaaattatagggaccacttactaatttaaccttggagtatatatgatttcatcaatgaggtcttgttccattactagtagcctcac |
532 |
Q |
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| T |
41547060 |
caatatagtgtaaagaaattatagggaccacttactaatttaaccttggagtatatatgatttcatcaatgaggtcttgttccattactagtagcctcac |
41547159 |
T |
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| Q |
533 |
aagttcaaagaaattataaaatactgcctactacatgcttcaataaaacaggaaaatcacgttccaggccaagctacctacctagcaatctaaccaaaca |
632 |
Q |
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| T |
41547160 |
aagttcaaagaaattataaaatactgcctactacatgcttcaataaaacaggaaaatcacgttccaggccaagctacctacctagcaatctaaccaaaca |
41547259 |
T |
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| Q |
633 |
tttatttgatcacacatattgaactcaattccatacctgatgatg |
677 |
Q |
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| T |
41547260 |
tttatttgatcacacatattgaactcaattccatacctgatgatg |
41547304 |
T |
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