View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21008_low_4 (Length: 640)
Name: NF21008_low_4
Description: NF21008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21008_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 72 - 602
Target Start/End: Original strand, 6255685 - 6256218
Alignment:
| Q |
72 |
tttcagcactgcttctgtttgtgggagtccctttttgttaatgttaaagaggaattaactagctagttgtaatgtatgtacttgttgttgcctaatttta |
171 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6255685 |
tttcagcactgcttctgcttgtgggagtccctttttgttaatgttaaagaggaattaactagctagttgtaatgtatgtacttgttgttgcctaatttta |
6255784 |
T |
|
| Q |
172 |
ttagaaaggttttataattagagatagagggagtaaaatgcttgatttttgcttgatttttgttatactgattcaatatcattcnnnnnnnntattaact |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
6255785 |
ttagaaaggttttataattagagatagagggagtaaaatgcttgatttctgcttgatttttgttatactgattcaatatcattcaaaaaaaatattaact |
6255884 |
T |
|
| Q |
272 |
actttttgaatttatgtggatttaggttcaatttccggtggataagatgatggcaatgtgagaaatggtcaaacatggatgcttctcaaggaaatgtata |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6255885 |
actttttgaatttatgtggatttaggttcaatttccagtggataagatgatgacaatgtgagaaatggtcaaacatggatgcttctcaaggaaatttata |
6255984 |
T |
|
| Q |
372 |
tgtcagacaacaaacagagaataagaacttgaagaataagaaaa---aatagattttatgtgctactgtgtttgacagcagtcctgtgcagagttgcagt |
468 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
6255985 |
tgtcagacaacaaacagagaatacgaacttgaagaataagaaaaaaaaatagattttatgtgctactgtgtttgacaacagtcctatgcagagttgcagt |
6256084 |
T |
|
| Q |
469 |
ttttctgtgatgccactgcagttgcggtttggtgttgtgtttgggaggcttgctagcgtgttttggagttgcttctggctggcttttattgctattttgg |
568 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||| |
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| T |
6256085 |
ttttcagtgatgccactgcagttgcggtttggtgttgtgtttgggaggcttgctagcgtgttttgaagttgcttctggatagcttttattgctattttgg |
6256184 |
T |
|
| Q |
569 |
tttctgttatgttaaggtagcaggtttccagggg |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
6256185 |
tttctgttatgttaaggtagcaggtttccagggg |
6256218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 6255616 - 6255655
Alignment:
| Q |
18 |
gcaacacatgtattttatgtgtgtcattcaagtatacatt |
57 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||| |
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| T |
6255616 |
gcaacacatgtattttctgtgtgtcattcaagtatacatt |
6255655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 72 - 573
Target Start/End: Complemental strand, 43430558 - 43430057
Alignment:
| Q |
72 |
tttcagcactgcttctgtttgtgggagtccctttttgttaatgttaaagaggaattaactagctagttgtaatgtatgtacttgttgttgcctaatttta |
171 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |
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|
| T |
43430558 |
tttcagcactgcttctgcttgtggcagtccctttttgttaatgttaaagaggaattaactaactagttgtaatatatgtacttgttgatgcctaatttta |
43430459 |
T |
|
| Q |
172 |
ttagaaaggttttataattagagatagagggagtaaaatgcttgatttttgcttgatttttgttatactgattcaatatcattcnnnnnnnntattaact |
271 |
Q |
| |
|
||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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|
| T |
43430458 |
ttagaaaagttttataattagagattgatggagtaaaatgcttgatttttgcttgatttttgttatactgattaaatatcattcaaaaaaactattaact |
43430359 |
T |
|
| Q |
272 |
actttttgaatttatgtggatttaggttcaatttccggtggataagatgatggcaatgtgagaaatggtcaaacatggatgcttctcaaggaaatgtata |
371 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| | ||| ||||| ||||||||||||| ||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
43430358 |
actttttgaatttacgtggatttaggttcaattttcagtgaataaggtgatggcaatgtgtgaaatggtcaagcatggatgcttctcaaggaaatttata |
43430259 |
T |
|
| Q |
372 |
tgtcagacaacaaacagagaataagaacttgaagaataagaaaaaatagattttatgtgctactgtgtttgacagcagtcctgtgcagagttgcagtttt |
471 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
43430258 |
tgctagacaacaaacagagaataagaacttgaagaataagaaaaaatagattttatgtgctgctgtgtttgacagcagtcctgtgcagagttgcagtttt |
43430159 |
T |
|
| Q |
472 |
tctgtgatgccactgcagttgcggtttggtgttgtgtttgggaggcttgctagcgtgttttggagttgcttctggctggcttttattgctattttggttt |
571 |
Q |
| |
|
|| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43430158 |
tccgtgatgccactgcagttgtgatttggtgttgtgtttgggaggcttgctagcgtgtttcggagttgcttctggctggcttttattgctattttggttt |
43430059 |
T |
|
| Q |
572 |
ct |
573 |
Q |
| |
|
|| |
|
|
| T |
43430058 |
ct |
43430057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 72 - 602
Target Start/End: Complemental strand, 51208132 - 51207615
Alignment:
| Q |
72 |
tttcagcactgcttctgtttgtgggagtccctttttgttaatgttaaagaggaattaactagctagttgtaatgtatgtacttgttgttgcctaatttta |
171 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
51208132 |
tttcagcactgcttctgcttgtggcagtccctttttgttaattttaaagagaaattaactagctagttgtaatatatgtacttgttgttgcctaatttta |
51208033 |
T |
|
| Q |
172 |
ttagaaaggttttataattagagatagagggagtaaaatgcttgatttttgcttgatttttgttatactgattcaatatcattcnnnnnnnntattaact |
271 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||| |
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| T |
51208032 |
ttaaaaaagttttataattagagatagagggagtaaaatgcttgatttttg-----------ttatactgattcaatgtcattcaaaaaaactattaact |
51207944 |
T |
|
| Q |
272 |
actttttgaatttatgtggatttaggttcaatttccggtggataagatgatggcaatgtgagaaatggtcaaacatggatgcttctcaaggaaatgtata |
371 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| | ||||||||||||| | | |||||||||||| |||| |||||||||||||||||||||| |||| |
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|
| T |
51207943 |
actttttgaatttatgtagatttaggttcaattttcagtggataagatgacgaccatgtgagaaatgctcaagcatggatgcttctcaaggaaatttata |
51207844 |
T |
|
| Q |
372 |
tgtcagacaacaaacagagaataagaacttgaagaataagaaaaaatagattttatgtgctactgtgtttgacagcagtcctgtgcagagttgcagtttt |
471 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||| |||||||||||| |
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|
| T |
51207843 |
tgctaga--acaaacagagaataagaacttgaagaataagaaaaaatagattttatgtgttgttgtgtttaacagcagtcctgtgcaaagttgcagtttt |
51207746 |
T |
|
| Q |
472 |
tctgtgatgccactgcagttgcggtttggtgttgtgtttgggaggcttgctagcgtgttttggagttgcttctggctggcttttattgctattttggttt |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51207745 |
tctgtgatgccactgcagttgcggtttggtgttgtgtttgggaggccctctagcgtgttttggagttgcttctggctggcttttattgctattttggttt |
51207646 |
T |
|
| Q |
572 |
ctgttatgttaaggtagcaggtttccagggg |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
51207645 |
ctgttatgttaaggtagcaggtttccagggg |
51207615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 51208201 - 51208162
Alignment:
| Q |
18 |
gcaacacatgtattttatgtgtgtcattcaagtatacatt |
57 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
51208201 |
gcaacacatgtactttctgtgtgtcattcaagtatacatt |
51208162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 48074200 - 48074115
Alignment:
| Q |
129 |
actagctagttgtaatgtatgtacttgttgttg-cctaattttattagaaaggttttataattagagatagagggagtaaaatgct |
213 |
Q |
| |
|
||||| |||||| ||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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|
| T |
48074200 |
actagttagttgaaatatatgtacttgttgtttacctaattttattagaaaagttttataattagagatagaggaagtaaaatgct |
48074115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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