View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21008_low_7 (Length: 449)
Name: NF21008_low_7
Description: NF21008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21008_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 40893970 - 40894392
Alignment:
| Q |
1 |
ccatcttcatttttaaattgaatttcatattggaggatttctggttgtttgtttcagggagcttggactattttaggagttgtttgtctgtttcnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
40893970 |
ccatcttcatttttaaattgaatttcatattggaggatttctggttgtttgtttcagggagcttgaactatttcaggagttgtttgtctgtttctttttt |
40894069 |
T |
|
| Q |
101 |
nnctctctcgccatttcagcttcaaatttgcgtttgatttttcatttagggagtgagtgagatcatttgtagtggatgtatgtgtagcttcttgtggtgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40894070 |
ttttctctcgccatttcagcttcaaatttgcgtttgatttttcatttaggaagtgagtgagatcatttgtagtggatgtatgtgtagcttcttgtggtgt |
40894169 |
T |
|
| Q |
201 |
gtctcagaattatgtggtttctgtacatatggagctacaaaaaccatgaatgttgtaatgtttgtggtgtgttaaagttggaattgttttacaattagga |
300 |
Q |
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| T |
40894170 |
gtctcagaattatgtggtttgtgtacatatggagctacaaaaatcatgaatgttgtaatgtttgtggtgtgttaaagttggaattgttttacaattagga |
40894269 |
T |
|
| Q |
301 |
cccaaaagttgtcttatgagaaaaggatgaactttgatttacattatttacttttgttgttaatcttatgtggtttttaaatcgttcttctatttggtta |
400 |
Q |
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| T |
40894270 |
cccaaaagttgtcttatgagaaaatgatgaactttgatttacattatttacttttgttgttaattttatgtggtttttaaatcgttcttctatttggtta |
40894369 |
T |
|
| Q |
401 |
tggagttttgggaaaatttagaa |
423 |
Q |
| |
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| T |
40894370 |
tggagttttgggaaaatttagaa |
40894392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 423
Target Start/End: Original strand, 36668704 - 36668776
Alignment:
| Q |
351 |
cttttgttgttaatcttatgtggtttttaaatcgttcttctatttggttatggagttttgggaaaatttagaa |
423 |
Q |
| |
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| T |
36668704 |
cttttgttgttaattttttgggttttttaaatctttcttgaatttggttatagagttttgagaaaatttagaa |
36668776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 423
Target Start/End: Original strand, 31621655 - 31621726
Alignment:
| Q |
351 |
cttttgttgttaatcttatgtggttttt-aaatcgttcttctatttggttatggagttttgggaaaatttagaa |
423 |
Q |
| |
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| T |
31621655 |
cttttgttgttaattttttggggttttttaaatctttcttcaatttggtta--gagttttgagaaaatttagaa |
31621726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 31621364 - 31621396
Alignment:
| Q |
112 |
catttcagcttcaaatttgcgtttgatttttca |
144 |
Q |
| |
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| T |
31621364 |
catttcagcttcaaatttgcgtttgctttttca |
31621396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 423
Target Start/End: Complemental strand, 26529995 - 26529946
Alignment:
| Q |
374 |
tttttaaatcgttcttctatttggttatggagttttgggaaaatttagaa |
423 |
Q |
| |
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|||||||||| |||||| |||||||||| |||||||| |||||||||||| |
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|
| T |
26529995 |
tttttaaatctttcttcaatttggttatagagttttgagaaaatttagaa |
26529946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 421
Target Start/End: Original strand, 17330762 - 17330831
Alignment:
| Q |
352 |
ttttgttgttaatcttatgtggtttttaaatcgttcttctatttggttatggagttttgggaaaatttag |
421 |
Q |
| |
|
|||||| || ||| ||||| | ||| |||||| |||||||||||||||||||| |||| |||||||||| |
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| T |
17330762 |
ttttgtggtcaattttatgcgatttctaaatctttcttctatttggttatggaaatttgagaaaatttag |
17330831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 36574766 - 36574734
Alignment:
| Q |
112 |
catttcagcttcaaatttgcgtttgatttttca |
144 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |
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|
| T |
36574766 |
catttcagcttcaaatttgcgtttgctttttca |
36574734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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