View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21009_high_12 (Length: 319)
Name: NF21009_high_12
Description: NF21009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21009_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 29727262 - 29726974
Alignment:
| Q |
13 |
catcaagaatagcttgaataccaccatcaccaggcatatctccagatattttaagatgaagtaatccaggcattgttttggcaatagcaaataagcacac |
112 |
Q |
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| T |
29727262 |
catcaagaatagcttgaataccatcatcaccaggcatatctccagatattttaagatgaagtaatcttggcattgttttggcaatagcaaatgagcacac |
29727163 |
T |
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| Q |
113 |
atcttgctcgatgtagtccgaaggcggcaaactgtattttaatgatttcaaaagagggcaggatcggccaacaacttcaagaaaatcattagacaattga |
212 |
Q |
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| T |
29727162 |
atcttgcccgatgtagtccgaaggcagcaaactgtattttagtgatttcaaaagagggcagcatcggccaacaacttcaagagaatcattagacaattga |
29727063 |
T |
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| Q |
213 |
aggttatgagaaagctcaagctcctctaattgtgacagtttctttacagcttcaataaaacctctttccgagagtctagcacaatttgc |
301 |
Q |
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| T |
29727062 |
aggttatgagaaagctcaatctcctctaattgtgacagtttctttacagcttcaataaaacctctttccgagagtctagcacaatttgc |
29726974 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 25784086 - 25784132
Alignment:
| Q |
147 |
tattttaatgatttcaaaagagggcaggatcggccaacaacttcaag |
193 |
Q |
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| T |
25784086 |
tatttcaatgatttcaaaagagggcaatattggccaacaacttcaag |
25784132 |
T |
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