View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21009_high_13 (Length: 287)
Name: NF21009_high_13
Description: NF21009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21009_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 139 - 261
Target Start/End: Complemental strand, 12617181 - 12617059
Alignment:
| Q |
139 |
atatttaacatgattgaatctctaaattatgcatattgatattaatatcaaagccaatccaacaaagtgtgtaatgtgtaatgaaatgnnnnnnnnctta |
238 |
Q |
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| T |
12617181 |
atatttaacatgattgaatctctatattatacatattgatattaatatcaaagccaatccaacaaagtgtgtaatgtgtaatgaaatgttttttttttta |
12617082 |
T |
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| Q |
239 |
acgccttgttcctaagctagaac |
261 |
Q |
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| T |
12617081 |
acgccttgttcctaagctagaac |
12617059 |
T |
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