View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21009_high_18 (Length: 242)
Name: NF21009_high_18
Description: NF21009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21009_high_18 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 30719447 - 30719671
Alignment:
| Q |
18 |
agatgcttccattgcaatgccacaaagtccttcggctgcatctacgcccctttgcatcctaatgtatccttcttcaccccaatcagttccccatgaattc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719447 |
agatgcttccattgcaatgccacaaagtccttcggctgcatcgactcccctttgcatcttaatgtatccttcttcaccccaatcagttccccatgaattc |
30719546 |
T |
|
| Q |
118 |
ttaaccaaccaatacttagttccatcattaccgacaccataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccac |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719547 |
ttaaccaaccaatacttggttccatcattaccgacaccataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccac |
30719646 |
T |
|
| Q |
218 |
ttttgtaaaactgaaagtcagaccc |
242 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
30719647 |
ttttgtaaaactgaaagtcagaccc |
30719671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 30881912 - 30881688
Alignment:
| Q |
18 |
agatgcttccattgcaatgccacaaagtccttcggctgcatctacgcccctttgcatcctaatgtatccttcttcaccccaatcagttccccatgaattc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30881912 |
agatgcttccattgcaatgccacaaagtccttcggctgcatcgactcccctttgcatcttaatgtatccttcttcaccccaatcagttccccatgaattc |
30881813 |
T |
|
| Q |
118 |
ttaaccaaccaatacttagttccatcattaccgacaccataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccac |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30881812 |
ttaaccaaccaatacttggttccatcattaccgacaccataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccac |
30881713 |
T |
|
| Q |
218 |
ttttgtaaaactgaaagtcagaccc |
242 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
30881712 |
ttttgtaaaactgaaagtcagaccc |
30881688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 44730883 - 44731104
Alignment:
| Q |
18 |
agatgcttccattgcaatgccacaaagtccttcggctgcatctacgcccctttgcatcctaatgtatccttcttcaccccaatcagttccccatgaattc |
117 |
Q |
| |
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|||||||| ||||||||||||||| |||||||| || ||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
44730883 |
agatgcttgcattgcaatgccacagagtccttcagcggcatccactcccctttgcatcctaatgtatccttcttcgccccaatcagttccccatgagttc |
44730982 |
T |
|
| Q |
118 |
ttaaccaaccaatacttagttccatcattaccgacaccataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccac |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||||| |||||||| ||||||||||||||| |||||||||| | |
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| T |
44730983 |
ttaaccaaccaatacttggttccatcattaccgacaccataacccacagcggtgacaccatgatccaactcggttccacatgaaccactaaagacaccgc |
44731082 |
T |
|
| Q |
218 |
ttttgtaaaactgaaagtcaga |
239 |
Q |
| |
|
|||||||||| ||||||||||| |
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| T |
44731083 |
ttttgtaaaattgaaagtcaga |
44731104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 16867271 - 16867488
Alignment:
| Q |
19 |
gatgcttccattgcaatgccacaaagtccttcggctgcatctacgcccctttgcatcctaatgtatccttcttcaccccaatcagttccccatgaattct |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||| || ||||| || || ||||||||| |||||||||||||||||||||| || |||||||| || || | |
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| T |
16867271 |
gatgcttgcattgcaatgccacaaagtccttcagcagcatcaacacctctttgcatcataatgtatccttcttcaccccattcggttccccaagagtttt |
16867370 |
T |
|
| Q |
119 |
taaccaaccaatacttagttccatcattaccgacaccataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccact |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||| |||||||||||||| ||||||||||||||||| ||||| |
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| T |
16867371 |
taaccaaccaatacttagttccatcattactaacaccataacccacggcggtaacaccatgatccaactcagttccgcatgaaccagtaaagacgccact |
16867470 |
T |
|
| Q |
219 |
tttgtaaaactgaaagtc |
236 |
Q |
| |
|
|||||| || |||||||| |
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|
| T |
16867471 |
tttgtagaattgaaagtc |
16867488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 30892986 - 30892786
Alignment:
| Q |
27 |
cattgcaatgccacaaagtccttcggctgcatctacgcccctttgcatcctaatgtatccttcttcaccccaatcagttccccatgaattcttaaccaac |
126 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30892986 |
cattgcaatgccacaaagtccttgagcagcatctacgctcctttgcatcctaatgtatccttcttcaccccaatcatttccccatgaattcttaaccaac |
30892887 |
T |
|
| Q |
127 |
caatacttagttccatcattaccgacaccataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccacttttgtaaa |
226 |
Q |
| |
|
|||||||| ||||||||||||| | |||||||| || || || |||||||| ||||||| ||| |||||||||||||| ||||||||||||||||||| |
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| T |
30892886 |
caatacttggttccatcattactaatgccataacccacagcagtaacaccatgatccaactgagtaccacatgaaccagtgaagacaccacttttgtaaa |
30892787 |
T |
|
| Q |
227 |
a |
227 |
Q |
| |
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| |
|
|
| T |
30892786 |
a |
30892786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 31185268 - 31185320
Alignment:
| Q |
67 |
ctttgcatcctaatgtatccttcttcaccccaatcagttccccatgaattctt |
119 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||| |||| |||||||||||||| |
|
|
| T |
31185268 |
ctttgcatccttatgtaccctttttcaccccacacagtgccccatgaattctt |
31185320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 8899527 - 8899306
Alignment:
| Q |
18 |
agatgcttccattgcaatgccacaaagtccttcggctgcatctacgcccctttgcatcctaatgtatccttcttcaccccaatcagttccccatgaattc |
117 |
Q |
| |
|
|||||| | ||||||||||||||| || ||||| || || || || |||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| |
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|
| T |
8899527 |
agatgcctgcattgcaatgccacagagcccttcagcagcttcaactcccctttgcatcataatgtaaccttcttcaccccaatcagttccccatgagttc |
8899428 |
T |
|
| Q |
118 |
ttaaccaaccaatacttagttccatcattaccgacaccataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccac |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| || |||||||||||||| |||||||| ||||| ||||||| |
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|
| T |
8899427 |
ttaaccaaccaatacttggttccatcattactgacaccataacctacggcagtgacaccgtgatccaactcagttccgcatgaaccggtaaatacaccac |
8899328 |
T |
|
| Q |
218 |
ttttgtaaaactgaaagtcaga |
239 |
Q |
| |
|
|||||||||| ||||||||||| |
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|
| T |
8899327 |
ttttgtaaaattgaaagtcaga |
8899306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 31727685 - 31727464
Alignment:
| Q |
18 |
agatgcttccattgcaatgccacaaagtccttcggctgcatctacgcccctttgcatcctaatgtatccttcttcaccccaatcagttccccatgaattc |
117 |
Q |
| |
|
||||| || ||||||||||||||| |||||||| | ||||| || |||||||||||||||||||| |||||||||||||| | |||||||||||||||| |
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| T |
31727685 |
agatggttgcattgcaatgccacatagtccttctgaagcatccacacccctttgcatcctaatgtacccttcttcaccccattgagttccccatgaattc |
31727586 |
T |
|
| Q |
118 |
ttaaccaaccaatacttagttccatcattaccgacaccataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccac |
217 |
Q |
| |
|
|| ||||||||||||| ||| |||| | ||| |||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||| |
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|
| T |
31727585 |
ttcaccaaccaatactcagtctcatcttcaccaacaccataacctacaacagctacaccatgatccaactcagttccacatgaaccagtaaatacaccac |
31727486 |
T |
|
| Q |
218 |
ttttgtaaaactgaaagtcaga |
239 |
Q |
| |
|
|||||||||| || |||||||| |
|
|
| T |
31727485 |
ttttgtaaaattggaagtcaga |
31727464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 4744959 - 4744895
Alignment:
| Q |
79 |
atgtatccttcttcaccccaatcagttccccatgaattcttaaccaaccaatacttagttccatc |
143 |
Q |
| |
|
||||| ||||||||||||||| | | ||||| |||||||||| ||||||||||||||||||||| |
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|
| T |
4744959 |
atgtagccttcttcaccccaacctttaccccaagaattcttaatcaaccaatacttagttccatc |
4744895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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