View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21009_high_2 (Length: 518)
Name: NF21009_high_2
Description: NF21009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21009_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 76 - 511
Target Start/End: Complemental strand, 45891950 - 45891515
Alignment:
| Q |
76 |
gaacatctaatttaagtgactatcatcatatgaatatgtgtatgtgaatctaatatgcaaatacactacacaagcaaaacataaatttatttagatgact |
175 |
Q |
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| T |
45891950 |
gaacatctaatttaagttactatcatcatatgaatatgtgtatgcgaatctaatatgcacatacacaacacaagcaaaacataaatttatttagatgact |
45891851 |
T |
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| Q |
176 |
gattataataagatgcaactaattaataccttgaatataacttcgtcataggaaccaggtgaaatttgaagagctttataacctccatcattgaaggccc |
275 |
Q |
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| T |
45891850 |
gattataataagatgcaactaattaataccttgaatataacttcgtcataggaaccaggtgaaatttgaagagctttataacctccatcattgaaggccc |
45891751 |
T |
|
| Q |
276 |
atgttcttgccaagtttaaaccattttgggaagcttcttgaaaagttgtagtaactttagacattgttgatgggtctgatgctacaatcattaaaaaata |
375 |
Q |
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| T |
45891750 |
atgttcttgccaagtttaaaccattttgggaagcttcttgaaaagttgtagtaactttagacattgttgatgggtctgatgctacaatcattaaaaaata |
45891651 |
T |
|
| Q |
376 |
cgaattgaacccattcaagtacaaaggttttccgttcagaacaaaactagtttcctttcgttgaacgaaaccactttcataaagagttttattattgcct |
475 |
Q |
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| T |
45891650 |
cgaattgaacccattcaagtacaaaggttttccgttcagaacaaaactagtttcctttcgttgaacgaaaccattttcgtaaagagttttattattgcct |
45891551 |
T |
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| Q |
476 |
aagtgagtgtgtgagttacgatgatgttgatgatga |
511 |
Q |
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| T |
45891550 |
aagtgagtgtgtgagttacgatgatgttgatgatga |
45891515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 221 - 321
Target Start/End: Original strand, 38085969 - 38086069
Alignment:
| Q |
221 |
tcataggaaccaggtgaaatttgaagagctttataacctccatcattgaaggcccatgttcttgccaagtttaaaccattttgggaagcttcttgaaaag |
320 |
Q |
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| T |
38085969 |
tcataagaaccaggagagatttgaagagctttataacctccatcattgaaagcccatgttcttcctacatttaaaccatgttgagaagcttgttgaaaag |
38086068 |
T |
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| Q |
321 |
t |
321 |
Q |
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| T |
38086069 |
t |
38086069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 318
Target Start/End: Original strand, 38091556 - 38091646
Alignment:
| Q |
228 |
aaccaggtgaaatttgaagagctttataacctccatcattgaaggcccatgttcttgccaagtttaaaccattttgggaagcttcttgaaa |
318 |
Q |
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| T |
38091556 |
aaccaggagaaatttgaagggctttatagcctccatcattgaaagcccatgttcttcctacatttaaaccatgttgtgaagcttgttgaaa |
38091646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 221 - 319
Target Start/End: Original strand, 38156084 - 38156182
Alignment:
| Q |
221 |
tcataggaaccaggtgaaatttgaagagctttataacctccatcattgaaggcccatgttcttgccaagtttaaaccattttgggaagcttcttgaaaa |
319 |
Q |
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| T |
38156084 |
tcataagaaccaggagaaatttgaagaggtttagaatctccatcgttgaaagcccatgttcttcccacatttaaaccatgttgagaagcttgttgaaaa |
38156182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 242 - 392
Target Start/End: Original strand, 38111810 - 38111960
Alignment:
| Q |
242 |
tgaagagctttataacctccatcattgaaggcccatgttcttgccaagtttaaaccattttgggaagcttcttgaaaagttgtagtaactttagacattg |
341 |
Q |
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| T |
38111810 |
tgaagagctttataacctccatcgttgcaagcccatgttcttcctacatttaaaccatgtcgagaagcttgttggaaatttgaagtgaccttagaacttg |
38111909 |
T |
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| Q |
342 |
ttgatgggtctgatgctacaatcattaaaaaatacgaattgaacccattca |
392 |
Q |
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| T |
38111910 |
tagatgggtcagatgccatgatcattaaccaataggaattgaatccattca |
38111960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 38521722 - 38521775
Alignment:
| Q |
229 |
accaggtgaaatttgaagagctttataacctccatcattgaaggcccatgttct |
282 |
Q |
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| T |
38521722 |
accaggtgaaatttgaagagcattataatgaccatcattgaaagcccaagttct |
38521775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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