View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21009_high_20 (Length: 229)
Name: NF21009_high_20
Description: NF21009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21009_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 24512149 - 24512015
Alignment:
| Q |
13 |
aaaagtataaataaagtaccatgtatctgaaatcttggaaatgattctcaatccacacaaatgctactcatgttagcttcactgtgaatcgatttgaatg |
112 |
Q |
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| T |
24512149 |
aaaagtataaataaagtaccatgtatctgaaatcttggaaatgattctcaatccacacaaatgctactcatgttagcttcactgtgaatcgatttgaatg |
24512050 |
T |
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| Q |
113 |
ccatgacttgctttgaattatacatagctaaacat |
147 |
Q |
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| T |
24512049 |
ccatgacttgctttgaattatacatagctaaacat |
24512015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 24512022 - 24511955
Alignment:
| Q |
159 |
ctaagcatgtgaattatc----actaaagttgtgtttggcattatttaactcatatctgtgctgctcc |
222 |
Q |
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|||| ||||||||||||| |||||||||| ||||||||||||||||||||||| |||| |||||| |
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| T |
24512022 |
ctaaacatgtgaattatctatcactaaagttgggtttggcattatttaactcatatttgtggtgctcc |
24511955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 9536392 - 9536265
Alignment:
| Q |
13 |
aaaagtataaataaagtaccatgtatc----tgaaatcttggaaatgattctcaatccacacaaatgctactcatgttagcttcactgtgaatcgatttg |
108 |
Q |
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||||||||||| ||||||| ||||||| |||||||||||| |||||| | || ||||||| ||||||| || ||||||||||||||||| |||| |
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| T |
9536392 |
aaaagtataaacaaagtacgatgtatcacagtgaaatcttggagttgattcccgttcaacacaaaagctactcctgctagcttcactgtgaatcaatttt |
9536293 |
T |
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| Q |
109 |
aatgccatgacttgctttgaattataca |
136 |
Q |
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| T |
9536292 |
aatgccatgaattacattgaatcataca |
9536265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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