View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21009_high_5 (Length: 424)
Name: NF21009_high_5
Description: NF21009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21009_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 50765095 - 50764692
Alignment:
| Q |
1 |
atgttaatggaattgaaatttgaattttatgcaggccggtaaatcctacatggccttaaaagtgttcgatgaaatgttaagccaaaagtgcaaacctaat |
100 |
Q |
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| T |
50765095 |
atgttaatggaattgaaatttgaattttatgcaggccggtaaatcctacatggccttaaaagtgttcgatgaaatgttaagccaaaaatgcaaacctaat |
50764996 |
T |
|
| Q |
101 |
atttgcacatatactgctctagtgaatgcatttgcaagagagggattatgtgagaaagcagaagaaatatttgagcagatgcaagaagcaggacttgaac |
200 |
Q |
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| T |
50764995 |
atttgcacatatactgctctagtgaatgcatttgcaagagagggattatgtgagaaagcagaagaaatatttgagcagatgcaagaagctggacttgaac |
50764896 |
T |
|
| Q |
201 |
ctgatgtatatgcttataatgcccttatggaagcttacaggttgttatatacgacagtataaatgcctttttgattgattaatgtgttatccctttgatc |
300 |
Q |
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| T |
50764895 |
ctgatgtatatgcttataatgcccttatggaagcttacaggttgttatatacgacagtataaatgccttcttgattgattaatgtgttatccctttgatc |
50764796 |
T |
|
| Q |
301 |
tattggtttatatacctagagaaaacaaaaatcat-atttctcttccgggaacagtcgtgcaggctttccttatggagcagcagaaattttttcattaat |
399 |
Q |
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| T |
50764795 |
tattggtttatatacctagagaaaacaaaaatcataatttctcttcccggaacagtcgtgcaggctttccttatggagcagcagaaattttttcattaat |
50764696 |
T |
|
| Q |
400 |
gcag |
403 |
Q |
| |
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|||| |
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| T |
50764695 |
gcag |
50764692 |
T |
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