View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21009_high_7 (Length: 382)
Name: NF21009_high_7
Description: NF21009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21009_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 369
Target Start/End: Complemental strand, 30720137 - 30719770
Alignment:
| Q |
17 |
aaggtcaatgtggtaagtgtctatctaacatgtaatgcattcaattacatactatgcatgtgatcaaatattgaattgtcattgaactctg--------- |
107 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| |
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| T |
30720137 |
aaggtcaatgtggtaagtgtctatctattatgtaatgcattcaattacaaactatg----tgatcaaatattgaattgtcattaaactctagttaatttt |
30720042 |
T |
|
| Q |
108 |
----------tttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaattcataagttgagtactgggaagttggtctctttatcggaa |
197 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30720041 |
aatttacctttttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaatccataagttgagtactgggaagttggtctctttatcggaa |
30719942 |
T |
|
| Q |
198 |
caagaacttgttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatggactca |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719941 |
caagaacttgttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatggactca |
30719842 |
T |
|
| Q |
298 |
acactgaagctcaatatccttatcaaggtgttgatggaacttgcagtgcaaataaagcatccatccatgcag |
369 |
Q |
| |
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|||||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
30719841 |
acactgaagctcaatacccctatcaaggtgttgacggaacttgcagtgcaaacaaagcatccatccatgcag |
30719770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 30881222 - 30881589
Alignment:
| Q |
17 |
aaggtcaatgtggtaagtgtctatctaacatgtaatgcattcaattacatactatgcatgtgatcaaatattgaattgtcattgaactctg--------- |
107 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||| || ||| |
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| T |
30881222 |
aaggtcaatgtggtaagtgtctatctattatgtaatgcattcaattacaaactatg----tgatcaaatattgaattgtcattaaattctagttaatttt |
30881317 |
T |
|
| Q |
108 |
----------tttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaattcataagttgagtactgggaagttggtctctttatcggaa |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30881318 |
aatttacctttttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaatccataagttgagtactgggaagttggtctctttatcggaa |
30881417 |
T |
|
| Q |
198 |
caagaacttgttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatggactca |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30881418 |
caagaacttgttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatggactca |
30881517 |
T |
|
| Q |
298 |
acactgaagctcaatatccttatcaaggtgttgatggaacttgcagtgcaaataaagcatccatccatgcag |
369 |
Q |
| |
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|||||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
30881518 |
acactgaagctcaatacccctatcaaggtgttgacggaacttgcagtgcaaacaaagcatccatccatgcag |
30881589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 350
Target Start/End: Original strand, 30892305 - 30892653
Alignment:
| Q |
17 |
aaggtcaatgtggtaagtgtctatctaacatgtaatgcattcaattacatactatgcatgtgatcaaatattgaattgtcattgaactctg--------- |
107 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| |
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| T |
30892305 |
aaggtcaatgtggtaagtgtctatctattatgtaatgcattcaattacaaactatg----tgatcaaatattgaattgtcattaaactctagttaatttt |
30892400 |
T |
|
| Q |
108 |
----------tttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaattcataagttgagtactgggaagttggtctctttatcggaa |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30892401 |
aatttacctttttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaatccataagttgagtactgggaagttggtctctttatcggaa |
30892500 |
T |
|
| Q |
198 |
caagaacttgttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatggactca |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30892501 |
caagaacttgttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatggactcc |
30892600 |
T |
|
| Q |
298 |
acactgaagctcaatatccttatcaaggtgttgatggaacttgcagtgcaaat |
350 |
Q |
| |
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|||||||||||||||| || |||||||||||||| |||||||||||||||||| |
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| T |
30892601 |
acactgaagctcaatacccctatcaaggtgttgacggaacttgcagtgcaaat |
30892653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 111 - 369
Target Start/End: Complemental strand, 44731464 - 44731206
Alignment:
| Q |
111 |
gtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaattcataagttgagtactgggaagttggtctctttatcggaacaagaacttgttg |
210 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
44731464 |
gtaggatgttgttgggcattttcagctgttgcagcaaccgaaggaattactaagttgagtactggaaagttggtctctttatcggaacaagaacttgttg |
44731365 |
T |
|
| Q |
211 |
attgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatggactcaacactgaagctca |
310 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |||||||| |
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| T |
44731364 |
attgtgacacaaaaggtgtggaccaaggttgtgagggtggtcttatggacgatgctttcaaattcatcattcaaaatcacggacttagtactgaagccgc |
44731265 |
T |
|
| Q |
311 |
atatccttatcaaggtgttgatggaacttgcagtgcaaataaagcatccatccatgcag |
369 |
Q |
| |
|
||| ||||||||||||||||| ||||| |||| |||||| ||||| ||||| ||||||| |
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| T |
44731264 |
atacccttatcaaggtgttgacggaacatgcaatgcaaacaaagcgtccattcatgcag |
44731206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 108 - 369
Target Start/End: Complemental strand, 16867854 - 16867593
Alignment:
| Q |
108 |
tttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaattcataagttgagtactgggaagttggtctctttatcggaacaagaacttg |
207 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||| | |
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|
| T |
16867854 |
tttgtaggatgttgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttgagtactggaaagttgatctctttatcagaacaagaactcg |
16867755 |
T |
|
| Q |
208 |
ttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatggactcaacactgaagc |
307 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||| |
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|
| T |
16867754 |
ttgactgtgacacgaaaggtgtggaccaaggttgtgagggtggtcttatggacgatgctttcaaattcatcattcaaaatcatggactaaataccgaagc |
16867655 |
T |
|
| Q |
308 |
tcaatatccttatcaaggtgttgatggaacttgcagtgcaaataaagcatccatccatgcag |
369 |
Q |
| |
|
| || ||||||||||||||||| || || |||| ||||| |||| ||||||| |||||| |
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|
| T |
16867654 |
caactacccttatcaaggtgttgacgggacatgcaacgcaaacaaaggatccatcaatgcag |
16867593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 108 - 361
Target Start/End: Original strand, 8898943 - 8899196
Alignment:
| Q |
108 |
tttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaattcataagttgagtactgggaagttggtctctttatcggaacaagaacttg |
207 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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|
| T |
8898943 |
tttgtaggatgttgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttgagtactggaaagttggtctctttatcagaacaagaacttg |
8899042 |
T |
|
| Q |
208 |
ttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatggactcaacactgaagc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8899043 |
ttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatggactcaacactgaagc |
8899142 |
T |
|
| Q |
308 |
tcaatatccttatcaaggtgttgatggaacttgcagtgcaaataaagcatccat |
361 |
Q |
| |
|
|||||| || ||||| |||||||||||||| || | |||||||||||||||||| |
|
|
| T |
8899143 |
tcaatacccctatcagggtgttgatggaacatgtaatgcaaataaagcatccat |
8899196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 108 - 342
Target Start/End: Original strand, 31727101 - 31727335
Alignment:
| Q |
108 |
tttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaattcataagttgagtactgggaagttggtctctttatcggaacaagaacttg |
207 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||| || || || |||||||||||||| ||||||||||||| |
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| T |
31727101 |
tttgtaggatgttgttgggcgttttctgcggttgcatcaaccgaaggaattcataagttgaccacaggaaatttggtctctttatcagaacaagaacttg |
31727200 |
T |
|
| Q |
208 |
ttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatggactcaacactgaagc |
307 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| | ||||||||| |
|
|
| T |
31727201 |
ttgattgtgacacaaatggtgaagaccaaggttgtgagggtggtcttatggatgatgcttttgaattcatcatccaaaataatggacttagcactgaagc |
31727300 |
T |
|
| Q |
308 |
tcaatatccttatcaaggtgttgatggaacttgca |
342 |
Q |
| |
|
| |||| ||||||||||||||||||||||| |||| |
|
|
| T |
31727301 |
tgaatacccttatcaaggtgttgatggaacatgca |
31727335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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