View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21009_high_8 (Length: 367)
Name: NF21009_high_8
Description: NF21009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21009_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 359
Target Start/End: Complemental strand, 35026060 - 35025709
Alignment:
| Q |
8 |
ctattattagtatatattagcatgacaaaatatggagaattagtgagaagtgtagagaagtactaaatacgaatcacaattgcggggtcaatttcgttag |
107 |
Q |
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| T |
35026060 |
ctattattagtatatattagcatgacaaaatatggaaaattagtgagaagtgtagagaagtactaaatatgaatcacaattgcggggtcaatttcgttag |
35025961 |
T |
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| Q |
108 |
gagacaagttaatcgagtggtccatgagttagcttgggcatcaagcttttttgctaatcgccaaannnnnnnnnnnngtccacattgtattgagacaatt |
207 |
Q |
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| T |
35025960 |
gagacaagttaatcgagtggtccatgagttagcttgggcatcaagcttttttgctaatcgccaaattttttatttttgtccacattgtattgagacaatt |
35025861 |
T |
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| Q |
208 |
atttttaatgaaatgcagtaagttttagtcatttagagaaggttgcaacttacaacaaaataagaaacacttggttaccttcttacatggtggttttact |
307 |
Q |
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| T |
35025860 |
atttttaatgaaatgcagtaagttttagtcatttagagaaggttgcaacttacaacaaaataagaaacacttggttaccttcttacatggtggttttact |
35025761 |
T |
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| Q |
308 |
cttaactctgatgggttgactttcttgtcactcttgacacactggacctttg |
359 |
Q |
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| T |
35025760 |
cttaactctgatgggttgactttcttgtcactcttgacacactggacctttg |
35025709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 37840960 - 37841034
Alignment:
| Q |
285 |
ccttcttacatggtggttttactcttaactctgatgggttgactttcttgtcactcttgacacactggacctttg |
359 |
Q |
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| T |
37840960 |
ccttcttgcatggtggttttgcacttaccactgatgggttgactctgttgtcactcttgactcactggacctttg |
37841034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 354
Target Start/End: Original strand, 37835338 - 37835407
Alignment:
| Q |
285 |
ccttcttacatggtggttttactcttaactctgatgggttgactttcttgtcactcttgacacactggac |
354 |
Q |
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| T |
37835338 |
ccttcttgcatagtggtttgactcttacctctgatgggttgatactgttgtcactcatgacacactggac |
37835407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 37821416 - 37821469
Alignment:
| Q |
306 |
ctcttaactctgatgggttgactttcttgtcactcttgacacactggacctttg |
359 |
Q |
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| T |
37821416 |
ctcttacctctgatggtttgactttgatgtcactcttgacacgttggacctttg |
37821469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 37829658 - 37829711
Alignment:
| Q |
306 |
ctcttaactctgatgggttgactttcttgtcactcttgacacactggacctttg |
359 |
Q |
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| T |
37829658 |
ctcttacctctgatggtttgactttgatgtcactcttgacacgttggacctttg |
37829711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 36864102 - 36864176
Alignment:
| Q |
285 |
ccttcttacatggtggttttactcttaactctgatgggttgactttcttgtcactcttgacacactggacctttg |
359 |
Q |
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| T |
36864102 |
ccttcttgcatggtggttttactcttaactcttatgggttgactttgttgtcactcttgactcactggacctttg |
36864176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 36862951 - 36863026
Alignment:
| Q |
27 |
gcatgacaaaatatggagaattagtgagaagtgtagagaagtactaaatacgaatcacaattgcggggtcaatttc |
102 |
Q |
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| T |
36862951 |
gcatgacaaaatatggagaattagtgagaaacgtagaaaactactaaatatgaatcacaactgcagggtcaatttc |
36863026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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