View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21009_low_1 (Length: 701)

Name: NF21009_low_1
Description: NF21009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21009_low_1
NF21009_low_1
[»] chr8 (19 HSPs)
chr8 (1-684)||(5879584-5880275)
chr8 (2-154)||(5829457-5829609)
chr8 (5-155)||(5826851-5827001)
chr8 (350-402)||(31212490-31212542)
chr8 (274-402)||(6906262-6906390)
chr8 (331-406)||(8791894-8791969)
chr8 (281-406)||(10069995-10070121)
chr8 (331-403)||(14148393-14148465)
chr8 (350-407)||(15229609-15229666)
chr8 (350-400)||(9861568-9861618)
chr8 (350-400)||(31212313-31212363)
chr8 (350-404)||(33892032-33892086)
chr8 (350-398)||(6906479-6906527)
chr8 (350-402)||(33892242-33892294)
chr8 (331-397)||(1047259-1047325)
chr8 (293-407)||(37037252-37037365)
chr8 (176-237)||(14148417-14148478)
chr8 (158-219)||(15229619-15229680)
chr8 (330-375)||(31943180-31943225)
[»] chr7 (25 HSPs)
chr7 (154-409)||(7760598-7760854)
chr7 (281-405)||(31198434-31198558)
chr7 (281-406)||(9686286-9686413)
chr7 (331-405)||(3555360-3555434)
chr7 (351-398)||(21657506-21657553)
chr7 (290-403)||(7760742-7760856)
chr7 (350-403)||(19105460-19105513)
chr7 (252-404)||(15329853-15330007)
chr7 (273-398)||(23797172-23797298)
chr7 (335-397)||(31198302-31198363)
chr7 (281-404)||(6036544-6036668)
chr7 (290-400)||(12821179-12821289)
chr7 (290-400)||(29635235-29635345)
chr7 (158-239)||(8129882-8129962)
chr7 (360-401)||(8130114-8130155)
chr7 (158-231)||(23797224-23797297)
chr7 (329-398)||(29635688-29635757)
chr7 (350-398)||(20165047-20165095)
chr7 (353-409)||(35054436-35054492)
chr7 (148-239)||(35054438-35054529)
chr7 (158-231)||(6036551-6036624)
chr7 (350-399)||(9686491-9686540)
chr7 (350-399)||(20164620-20164669)
chr7 (158-230)||(3555368-3555440)
chr7 (368-400)||(37081156-37081188)
[»] chr4 (10 HSPs)
chr4 (274-402)||(54164595-54164724)
chr4 (281-406)||(13552663-13552790)
chr4 (335-405)||(30941514-30941583)
chr4 (281-406)||(54164460-54164586)
chr4 (281-401)||(7513526-7513647)
chr4 (153-202)||(7513525-7513574)
chr4 (281-400)||(28687597-28687716)
chr4 (350-398)||(32185283-32185331)
chr4 (350-399)||(13552868-13552917)
chr4 (331-399)||(17250463-17250531)
[»] chr3 (19 HSPs)
chr3 (326-405)||(4304138-4304217)
chr3 (350-401)||(4304353-4304404)
chr3 (350-402)||(6931146-6931198)
chr3 (336-410)||(45405092-45405166)
chr3 (350-402)||(30172069-30172121)
chr3 (248-377)||(44094174-44094306)
chr3 (336-399)||(30430271-30430334)
chr3 (153-239)||(32618958-32619044)
chr3 (335-401)||(32618977-32619043)
chr3 (336-397)||(4475108-4475169)
chr3 (350-399)||(30173658-30173707)
chr3 (336-408)||(27614006-27614078)
chr3 (335-402)||(43907910-43907976)
chr3 (351-401)||(19279899-19279949)
chr3 (350-400)||(25799528-25799577)
chr3 (158-219)||(25799514-25799574)
chr3 (350-398)||(2928096-2928144)
chr3 (354-398)||(28725280-28725324)
chr3 (350-401)||(28725716-28725770)
[»] chr6 (12 HSPs)
chr6 (336-401)||(12289979-12290044)
chr6 (336-405)||(34637616-34637685)
chr6 (350-400)||(34637425-34637475)
chr6 (350-405)||(13340649-13340704)
chr6 (331-404)||(6190565-6190637)
chr6 (350-398)||(13340445-13340493)
chr6 (336-402)||(31298916-31298982)
chr6 (349-406)||(12290174-12290230)
chr6 (336-399)||(7359611-7359674)
chr6 (352-402)||(403305-403355)
chr6 (146-202)||(12289971-12290027)
chr6 (158-202)||(12290178-12290221)
[»] chr5 (24 HSPs)
chr5 (336-401)||(13657741-13657806)
chr5 (274-398)||(22297891-22298016)
chr5 (279-404)||(6843078-6843204)
chr5 (335-406)||(29673285-29673356)
chr5 (256-405)||(2344575-2344725)
chr5 (329-397)||(29673723-29673791)
chr5 (281-406)||(25906094-25906219)
chr5 (280-396)||(17047859-17047976)
chr5 (350-400)||(2846573-2846623)
chr5 (274-399)||(25905959-25906085)
chr5 (334-403)||(2846941-2847009)
chr5 (350-399)||(2858411-2858460)
chr5 (334-403)||(2858778-2858846)
chr5 (350-398)||(22297764-22297812)
chr5 (148-224)||(29673725-29673801)
chr5 (158-221)||(2846941-2847003)
chr5 (158-221)||(2858778-2858840)
chr5 (337-376)||(15773760-15773799)
chr5 (350-405)||(20510501-20510556)
chr5 (336-405)||(13657544-13657613)
chr5 (151-220)||(29673287-29673356)
chr5 (352-404)||(5161109-5161161)
chr5 (274-401)||(17047984-17048111)
chr5 (329-401)||(24490693-24490764)
[»] chr1 (22 HSPs)
chr1 (256-403)||(30749051-30749199)
chr1 (256-403)||(30770502-30770650)
chr1 (350-415)||(23485655-23485720)
chr1 (290-402)||(14760019-14760131)
chr1 (336-400)||(30746773-30746837)
chr1 (336-400)||(30768224-30768288)
chr1 (274-395)||(13765561-13765683)
chr1 (336-400)||(30748951-30749015)
chr1 (336-400)||(30770402-30770466)
chr1 (335-406)||(15393345-15393416)
chr1 (336-402)||(16706527-16706596)
chr1 (252-310)||(30746868-30746926)
chr1 (252-310)||(30768319-30768377)
chr1 (336-398)||(51900116-51900178)
chr1 (274-402)||(16706333-16706462)
chr1 (331-412)||(20171377-20171457)
chr1 (350-403)||(22679532-22679585)
chr1 (353-402)||(39785218-39785267)
chr1 (154-203)||(39785219-39785268)
chr1 (350-398)||(23528254-23528302)
chr1 (179-231)||(30746941-30746993)
chr1 (179-231)||(30768392-30768444)
[»] chr2 (26 HSPs)
chr2 (350-405)||(7328503-7328558)
chr2 (281-397)||(981053-981169)
chr2 (326-399)||(37897734-37897807)
chr2 (326-402)||(16192595-16192671)
chr2 (274-401)||(32483645-32483773)
chr2 (352-410)||(4921371-4921429)
chr2 (336-398)||(16127920-16127982)
chr2 (268-401)||(37897574-37897708)
chr2 (354-407)||(43130353-43130405)
chr2 (353-401)||(12874679-12874727)
chr2 (350-402)||(18509495-18509547)
chr2 (329-397)||(27847860-27847928)
chr2 (350-405)||(32945607-32945662)
chr2 (149-231)||(12874674-12874756)
chr2 (350-400)||(25330560-25330610)
chr2 (351-401)||(39159300-39159350)
chr2 (350-407)||(12874886-12874943)
chr2 (281-389)||(35926736-35926844)
chr2 (335-407)||(30714116-30714187)
chr2 (350-405)||(39786311-39786366)
chr2 (336-398)||(16126222-16126284)
chr2 (158-219)||(16127921-16127982)
chr2 (155-224)||(27847857-27847926)
chr2 (158-239)||(40152702-40152782)
chr2 (353-401)||(17368879-17368927)
chr2 (158-234)||(25330563-25330639)
[»] scaffold0025 (1 HSPs)
scaffold0025 (336-401)||(64017-64082)
[»] scaffold0042 (2 HSPs)
scaffold0042 (290-401)||(30310-30421)
scaffold0042 (284-389)||(30697-30802)
[»] scaffold0328 (1 HSPs)
scaffold0328 (349-401)||(11009-11060)


Alignment Details
Target: chr8 (Bit Score: 522; Significance: 0; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 684
Target Start/End: Complemental strand, 5880275 - 5879584
Alignment:
Q  1 taattttagctgtcaatatcttgatgtgaattttaaaattgcatattggatatttcaagaacgtc--tgattttcactcaatggtaaaaacccaacttga 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||||||||||||||||||||||||    
T  5880275 taattttagctgtcaatatcttgatgtgaattttaaaattgcatattggatatttcaagaactacactgattttcactcaatggtaaaaacccaacttga 5880176  T
Q  99 gtttttagtttagtatgtttggttttcagttgtgaaatttaatttcgtaaaattaaggattaaataagtaaattgctcccctaaataaaccaacatttaa 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |    
T  5880175 gtttttagtttagtatgtttggttttcagttgtgaaatttaatttcgtaaaattaaggattaaataagtaaattgttctcctaaataaaccaacatttga 5880076  T
Q  199 tttttgtccttttaaaatatttcttagattttttgttcctcnnnnnnnnttttatccatgaaattagttcatgctctcattgtagagtagagactaattt 298  Q
    ||||||||||||||||||||| |||||||||||||||||||         || ||||||||||||||||||||||||| |||||||||||||||||||||    
T  5880075 tttttgtccttttaaaatattccttagattttttgttcctcaaaaaaaaatt-atccatgaaattagttcatgctctcgttgtagagtagagactaattt 5879977  T
Q  299 catggatgaaaaatgttagagcaacccaagcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaac 398  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5879976 catggatgaaaaatgttagagggaccaaagcttaagaaatattttagaaagactaaaatcaaatattagtatatttagggagactatttacttatttaac 5879877  T
Q  399 cctaaaattaattttagttaacagtgaaattaggtttatcaaggaaataaatgatctcaggataatgatgataaatctcaagcttggtaaggatgatgct 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5879876 cctaaaattaattttagttaacagtgaaattaggtttatcaaggaaataaatgatctcaggataatgatgataaatctcaagcttggtaaggatgatgct 5879777  T
Q  499 agatgatgtgagtgtacctacaaacatcaatcaattattcaattgaggtgattnnnnnnntaaaattggaagacttccaacccggggagaatttgattag 598  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       |    |||||||||||||||||||||||||||||||||||    
T  5879776 agatgatgtgagtgtacctacaaacatcaatcaattattcaattgaggtgattaaaaatttttttttggaagacttccaacccggggagaatttgattag 5879677  T
Q  599 aagggttatgagattggaactgggttactcggattgt-----gtcccccaaagactctagaggtggaaaaacac--attttgtaggtagctag 684  Q
    |||||||||||||||||||||||||||||||||||||     || |||||||||||||||||||||||||||||  |||||||||||||||||    
T  5879676 aagggttatgagattggaactgggttactcggattgtgtgtggtgccccaaagactctagaggtggaaaaacacatattttgtaggtagctag 5879584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 5829609 - 5829457
Alignment:
Q  2 aattttagctgtcaatatcttgatgtgaattttaaaattgcatattggatatttcaagaac--gtctgattttcactcaatggtaaaaacccaacttgag 99  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    ||||||||||||||||| | |||||||||||||||    
T  5829609 aattttagttgtcaatatcttcatgtgaattttaaaattgcatattggatatttcaagaactacactgattttcactcaatgat-aaaacccaacttgag 5829511  T
Q  100 tttttagtttagtatgtttggttttcagttgtgaaatttaatttcgtaaaattaa 154  Q
    ||||| ||||||| ||||| | |||| ||||||||||||||||| ||||||||||    
T  5829510 tttttggtttagtgtgttttgctttc-gttgtgaaatttaattttgtaaaattaa 5829457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 5 - 155
Target Start/End: Complemental strand, 5827001 - 5826851
Alignment:
Q  5 tttagctgtcaatatcttgatgtgaattttaaaattgcatattggatatttcaagaac--gtctgattttcactcaatggtaaaaacccaacttgagttt 102  Q
    ||||| |||||||||||| ||||||||||||||| |||||||||||||||| ||||||    ||||||||||||||||| | ||||||||||||||||||    
T  5827001 tttagttgtcaatatcttcatgtgaattttaaaaatgcatattggatattttaagaactacactgattttcactcaatgat-aaaacccaacttgagttt 5826903  T
Q  103 ttagtttagtatgtttggttttcagttgtgaaatttaatttcgtaaaattaag 155  Q
    || ||||||| ||||| | |||| ||||||||||||||||| |||||||||||    
T  5826902 ttggtttagtgtgttttgctttc-gttgtgaaatttaattttgtaaaattaag 5826851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 31212490 - 31212542
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaacccta 402  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31212490 actaaaatcaaatgttggtatatttagggagactatttacttatttaacccta 31212542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 274 - 402
Target Start/End: Complemental strand, 6906390 - 6906262
Alignment:
Q  274 ctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatat 372  Q
    |||| |||||||||  ||||||||||||||||||||||| || ||   ||| || || |||| ||||||||| |   |||||| ||||||||| ||||||    
T  6906390 ctcaatgtagagtatggactaatttcatggatgaaaaattttggaaggaccaaaagcctaaggaatattttatggggactaaa-tcaaatgttggtatat 6906292  T
Q  373 ttagggagactatttacttatttaacccta 402  Q
    |||||| |||||||||||||||||||||||    
T  6906291 ttagggggactatttacttatttaacccta 6906262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 331 - 406
Target Start/End: Original strand, 8791894 - 8791969
Alignment:
Q  331 taagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaat 406  Q
    |||||||||||||| ||  | |||||||||||||||||||||||| |   ||||||||||||||||||||||||||    
T  8791894 taagaaatattttatgaggattaaaatcaaatgttagtatatttaagagaactatttacttatttaaccctaaaat 8791969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 281 - 406
Target Start/End: Original strand, 10069995 - 10070121
Alignment:
Q  281 tagagtagagactaatttcatggatgaaaaatgttagagcaacccaag-cttaagaaatattttaggaaaactaaaatcaaatgttagtatatttaggga 379  Q
    ||||| || |||||||||||| |||||||||| ||||||  ||| ||  | ||| |||||||||||||  | |||||| |||| || ||||||||||||     
T  10069995 tagagcagggactaatttcatagatgaaaaattttagagggaccaaaaacctaaaaaatattttaggaggattaaaataaaatattggtatatttagggg 10070094  T
Q  380 gactatttacttatttaaccctaaaat 406  Q
     ||||||| ||||||||||||||||||    
T  10070095 aactatttgcttatttaaccctaaaat 10070121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 331 - 403
Target Start/End: Complemental strand, 14148465 - 14148393
Alignment:
Q  331 taagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaa 403  Q
    |||||||||||||||||  ||||||||||||||||  ||||||||||| ||| | ||||||||| ||||||||    
T  14148465 taagaaatattttaggaggactaaaatcaaatgttgatatatttagggggaccacttacttattaaaccctaa 14148393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 350 - 407
Target Start/End: Complemental strand, 15229666 - 15229609
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaatt 407  Q
    |||||||| ||||||| ||||||||| ||  |||||||||||||||||||||||||||    
T  15229666 actaaaataaaatgttggtatatttaagggaactatttacttatttaaccctaaaatt 15229609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 350 - 400
Target Start/End: Complemental strand, 9861618 - 9861568
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccc 400  Q
    ||||||||||||||||  ||||||||||  |||||||||||||||||||||    
T  9861618 actaaaatcaaatgttgatatatttaggaggactatttacttatttaaccc 9861568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 350 - 400
Target Start/End: Complemental strand, 31212363 - 31212313
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccc 400  Q
    ||||||||||||||||  |||||||| || |||||||||||||||||||||    
T  31212363 actaaaatcaaatgttgatatatttaaggggactatttacttatttaaccc 31212313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 350 - 404
Target Start/End: Complemental strand, 33892086 - 33892032
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaa 404  Q
    |||||||||||||||| ||||||||| |   ||||||||||||||||||||||||    
T  33892086 actaaaatcaaatgttggtatatttaagagaactatttacttatttaaccctaaa 33892032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 398
Target Start/End: Original strand, 6906479 - 6906527
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaac 398  Q
    |||||||||||||||| |||||||||||| |||  ||||||||||||||    
T  6906479 actaaaatcaaatgttggtatatttagggggaccgtttacttatttaac 6906527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 33892242 - 33892294
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaacccta 402  Q
    |||||||||||||||| ||||||||| | ||| | ||||||||||||||||||    
T  33892242 actaaaatcaaatgttggtatatttaagaagattgtttacttatttaacccta 33892294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 397
Target Start/End: Complemental strand, 1047325 - 1047259
Alignment:
Q  331 taagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaa 397  Q
    |||| ||| ||||||||  | |||||| |||| |||||||||||||| |||| ||||||||||||||    
T  1047325 taaggaatgttttaggaggattaaaataaaatattagtatatttaggaagaccatttacttatttaa 1047259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 407
Target Start/End: Original strand, 37037252 - 37037365
Alignment:
Q  293 taatttcatggatgaaaaatgttagagcaacccaagcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttactta 392  Q
    |||||||||||||||||||| |||  | | |  |||  |||| ||||||||||    |||||||||||||||| | ||||||||  |||| |||||||||    
T  37037252 taatttcatggatgaaaaattttaagggaccaaaagtataaggaatattttagagggactaaaatcaaatgttggaatatttaga-agaccatttactta 37037350  T
Q  393 tttaaccctaaaatt 407  Q
    |||||||||| ||||    
T  37037351 tttaaccctataatt 37037365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 14148417 - 14148478
Alignment:
Q  176 cccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttttgttcc 237  Q
    |||||||||| | |||||||| ||||| |||||  ||||||||||||||| ||||| |||||    
T  14148417 cccctaaatatatcaacatttgattttagtcctcctaaaatatttcttaggtttttagttcc 14148478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 15229619 - 15229680
Alignment:
Q  158 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatt 219  Q
    |||||||||||||| | |||| |||||| |||||||||| ||||| |||| | |||||||||    
T  15229619 ttaaataagtaaatagttcccttaaatataccaacattttattttagtccctataaaatatt 15229680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 375
Target Start/End: Original strand, 31943180 - 31943225
Alignment:
Q  330 ttaagaaatattttaggaaaactaaaatcaaatgttagtatattta 375  Q
    ||||||||||||||| || |||||||||||||||||  ||||||||    
T  31943180 ttaagaaatattttaagagaactaaaatcaaatgttgatatattta 31943225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 8e-26; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 154 - 409
Target Start/End: Complemental strand, 7760854 - 7760598
Alignment:
Q  154 aggattaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttttgttcctcnnnnnnnnttttat 253  Q
    |||||||||||||||||| | ||||||||||| |||||||||| ||||| |||| | |||||||||||||||  |||| || ||||        ||| ||    
T  7760854 aggattaaataagtaaatagttcccctaaatataccaacatttgattttagtccctataaaatatttcttaggcttttggtccctc-caaaaattttcat 7760756  T
Q  254 ccatgaaattagttcatgctctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacc-caagcttaagaaatattttaggaaaact 352  Q
    ||||||||||||| | |  ||||| ||||||| |||| ||||||||||||||||| ||| || |||  |||  |||| |||  |||||||||||   |||    
T  7760755 ccatgaaattagtccctattctcaatgtagagcagaggctaatttcatggatgaacaattttggagggaccaaaagcctaaagaatattttagggggact 7760656  T
Q  353 aaaatcaaatgttagtatatttagggagactatttacttatttaaccc-taaaattaa 409  Q
    ||||||| ||| | ||||||||||   || |||||||||||||||||| |||||||||    
T  7760655 aaaatcatatgctggtatatttagaaggattatttacttatttaacccttaaaattaa 7760598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 281 - 405
Target Start/End: Original strand, 31198434 - 31198558
Alignment:
Q  281 tagagtagagactaatttcatggatgaaaaatgttagagcaacccaagcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggag 380  Q
    ||||| || |||||||||||| |||||||||| ||||||   |  |||| ||||||||||||||||| ||||||||||||||||| |||||||||  | |    
T  31198434 tagagcagggactaatttcatagatgaaaaattttagagggccaaaagcctaagaaatattttaggagaactaaaatcaaatgttggtatatttaaaggg 31198533  T
Q  381 actatttacttatttaaccctaaaa 405  Q
    |||||||||||||||||||| ||||    
T  31198534 actatttacttatttaacccaaaaa 31198558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 281 - 406
Target Start/End: Complemental strand, 9686413 - 9686286
Alignment:
Q  281 tagagtagagactaatttcatggatgaaaaatgttagagcaacc-caagcttaagaaatattttaggaaaact-aaaatcaaatgttagtatatttaggg 378  Q
    ||||| |||||||||||||||  ||||||||| ||||| | |||  |||||||| |||||||||  |   ||| |||||||||| |||||||||||||||    
T  9686413 tagagcagagactaatttcataaatgaaaaattttagaacgaccaaaagcttaaaaaatattttttggggactaaaaatcaaatattagtatatttaggg 9686314  T
Q  379 agactatttacttatttaaccctaaaat 406  Q
    ||| |||||||||||||||||| |||||    
T  9686313 agattatttacttatttaacccaaaaat 9686286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 331 - 405
Target Start/End: Complemental strand, 3555434 - 3555360
Alignment:
Q  331 taagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 405  Q
    ||||||||||||||||   |||||||||||||||| |||||||||||| ||| |||| |||||||||||||||||    
T  3555434 taagaaatattttagggggactaaaatcaaatgttggtatatttagggggaccatttgcttatttaaccctaaaa 3555360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 351 - 398
Target Start/End: Original strand, 21657506 - 21657553
Alignment:
Q  351 ctaaaatcaaatgttagtatatttagggagactatttacttatttaac 398  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  21657506 ctaatatcaaatgttagtatatttagggagactatttacttatttaac 21657553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 403
Target Start/End: Original strand, 7760742 - 7760856
Alignment:
Q  290 gactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactattta 388  Q
    ||||||||||||||||||||| | || |||  ||| || || ||||||||||||||     |||||||||||||||| ||||||||||||  ||||||||    
T  7760742 gactaatttcatggatgaaaatttttggagggaccaaaagcctaagaaatattttatagggactaaaatcaaatgttggtatatttaggggaactattta 7760841  T
Q  389 cttatttaaccctaa 403  Q
    ||||||||| |||||    
T  7760842 cttatttaatcctaa 7760856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 350 - 403
Target Start/End: Original strand, 19105460 - 19105513
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaa 403  Q
    |||||||||||| ||| |||||||||||| ||||||||||||||||||||||||    
T  19105460 actaaaatcaaaagttggtatatttagggggactatttacttatttaaccctaa 19105513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 252 - 404
Target Start/End: Complemental strand, 15330007 - 15329853
Alignment:
Q  252 atccatgaaattagttcatgctctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaag--cttaagaaatattttaggaaa 349  Q
    ||||||||||||||| |||| ||||| |||||||||  |||| ||||||| |||||||| | || ||   ||| ||   |||||| ||||| || ||       
T  15330007 atccatgaaattagtccatgttctcaatgtagagtatggacttatttcatagatgaaaatttttggatggaccaaaaaccttaagtaatatctttggggg 15329908  T
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaa 404  Q
    |||||||||||||||| ||||||||| || |||||||| | ||||||||||||||    
T  15329907 actaaaatcaaatgttggtatatttaaggggactatttccatatttaaccctaaa 15329853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 273 - 398
Target Start/End: Original strand, 23797172 - 23797298
Alignment:
Q  273 tctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaagct-taagaaatattttaggaaaactaaaatcaaatgttagtata 371  Q
    ||||| ||||||| |||||| ||||| |||||| |||| | ||||||  ||| ||  | |||||||||||||||    ||||||||||||||||  ||||    
T  23797172 tctcaatgtagagcagagaccaatttaatggataaaaagttttagagggaccaaaaatctaagaaatattttagagggactaaaatcaaatgttgatata 23797271  T
Q  372 tttagggagactatttacttatttaac 398  Q
    |||||||| ||||||||| ||||||||    
T  23797272 tttagggaaactatttacatatttaac 23797298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 335 - 397
Target Start/End: Complemental strand, 31198363 - 31198302
Alignment:
Q  335 aaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaa 397  Q
    ||||||||||| |  |||||||||||||||| ||||||||||||| |||||||||||||||||    
T  31198363 aaatattttagaaggactaaaatcaaatgttggtatatttaggga-actatttacttatttaa 31198302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 281 - 404
Target Start/End: Complemental strand, 6036668 - 6036544
Alignment:
Q  281 tagagtagagactaatttcatggatgaaaaatgttagagcaacccaag-cttaagaaatattttaggaaaactaaaatcaaatgttagtatatttaggga 379  Q
    |||||||||||||||||||||  ||||||||| ||||||   || ||  | ||| || ||||||| |   ||||||||||||||||  |||||||||||     
T  6036668 tagagtagagactaatttcataaatgaaaaattttagagaggccaaaaacctaaaaactattttaaggggactaaaatcaaatgttgatatatttagggg 6036569  T
Q  380 gactatttacttatttaaccctaaa 404  Q
     |||||||||||||||||| |||||    
T  6036568 aactatttacttatttaactctaaa 6036544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 290 - 400
Target Start/End: Complemental strand, 12821289 - 12821179
Alignment:
Q  290 gactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactattta 388  Q
    |||||||||||| |||||||| | |||||| |||| || || ||| ||||||||||||   | |||||||||| ||| ||||||||| || ||| |||||    
T  12821289 gactaatttcatagatgaaaatt-ttagaggaaccaaaagcctaaaaaatattttagggggattaaaatcaaacgttggtatatttaaggggaccattta 12821191  T
Q  389 cttatttaaccc 400  Q
    ||||||||||||    
T  12821190 cttatttaaccc 12821179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 290 - 400
Target Start/End: Complemental strand, 29635345 - 29635235
Alignment:
Q  290 gactaatttcatggatgaaaaatgttagagcaacccaagct-taagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactattta 388  Q
    |||||||| |||| ||||||||| ||||||  ||| ||  | |||| |||||||||||  | |||||||||||||||  ||||||||||| ||| |||||    
T  29635345 gactaattacatgtatgaaaaattttagagggaccaaaagtctaaggaatattttagggga-ctaaaatcaaatgttgatatatttagggggaccattta 29635247  T
Q  389 cttatttaaccc 400  Q
    ||||||||||||    
T  29635246 cttatttaaccc 29635235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 8129882 - 8129962
Alignment:
Q  158 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttttgttcctc 239  Q
    |||||||||||||| | || |||||||  |||||||||| |||||  ||||||||||||||||||| || |||| |||||||    
T  8129882 ttaaataagtaaat-gatctcctaaatctaccaacatttgattttaatccttttaaaatatttctttgacttttggttcctc 8129962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 401
Target Start/End: Original strand, 8130114 - 8130155
Alignment:
Q  360 aatgttagtatatttagggagactatttacttatttaaccct 401  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  8130114 aatgtttgtatatttaggaagactatttacttatttaaccct 8130155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 23797297 - 23797224
Alignment:
Q  158 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttt 231  Q
    ||||||| |||||| | | ||||||||| | |||||||| ||||| |||| | |||||||||||||||||||||    
T  23797297 ttaaatatgtaaatagtttccctaaatatatcaacatttgattttagtccctctaaaatatttcttagattttt 23797224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 29635688 - 29635757
Alignment:
Q  329 cttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaac 398  Q
    ||||| ||||||||||||| |||||||||||||||||  ||||||||||   || |||||| ||||||||    
T  29635688 cttaaaaaatattttaggagaactaaaatcaaatgttgatatatttaggacaaccatttacatatttaac 29635757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 398
Target Start/End: Original strand, 20165047 - 20165095
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaac 398  Q
    |||||||||||||||| ||||||||||| |||| |||| ||||||||||    
T  20165047 actaaaatcaaatgttggtatatttaggaagaccatttccttatttaac 20165095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 353 - 409
Target Start/End: Complemental strand, 35054492 - 35054436
Alignment:
Q  353 aaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaattaa 409  Q
    ||||| ||||||||||||||||||    |||||||||||||||||||||||| ||||    
T  35054492 aaaattaaatgttagtatatttagaagaactatttacttatttaaccctaaatttaa 35054436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 35054438 - 35054529
Alignment:
Q  148 aaattaaggattaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttttgttcctc 239  Q
    ||||| ||| |||||||||||||| | ||  ||||||| || |||||||||||||  ||| |||||||||||  ||||| |||| |||||||    
T  35054438 aaatttagggttaaataagtaaatagttcttctaaatatactaacatttaattttgatccctttaaaatattctttagacttttggttcctc 35054529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 6036551 - 6036624
Alignment:
Q  158 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttt 231  Q
    |||||||||||||| | ||||||||||| | |||||||| ||||| ||||  |||||||| || |||| |||||    
T  6036551 ttaaataagtaaatagttcccctaaatatatcaacatttgattttagtccccttaaaatagtttttaggttttt 6036624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 399
Target Start/End: Original strand, 9686491 - 9686540
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaacc 399  Q
    ||||||||||||| ||  ||||||||||  ||||||||||||||||||||    
T  9686491 actaaaatcaaatattgatatatttaggaggactatttacttatttaacc 9686540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 399
Target Start/End: Complemental strand, 20164669 - 20164620
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaacc 399  Q
    |||||||||||||||| ||||||||  || ||| ||||||||||||||||    
T  20164669 actaaaatcaaatgttggtatattttaggggaccatttacttatttaacc 20164620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 3555368 - 3555440
Alignment:
Q  158 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagatttt 230  Q
    ||||||||| |||| |  |||||||||| |||||||||| ||||| ||||   ||||||||||||||| ||||    
T  3555368 ttaaataagcaaatggtccccctaaatataccaacatttgattttagtccccctaaaatatttcttaggtttt 3555440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 37081188 - 37081156
Alignment:
Q  368 tatatttagggagactatttacttatttaaccc 400  Q
    |||||||||||| ||||||||||||||||||||    
T  37081188 tatatttagggaaactatttacttatttaaccc 37081156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 274 - 402
Target Start/End: Original strand, 54164595 - 54164724
Alignment:
Q  274 ctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaag-cttaagaaatattttaggaaaactaaaatcaaatgttagtatat 372  Q
    |||| ||||||| || ||||||||||||  ||||||||| ||||||  ||| ||  | ||| ||||||||||   | |||||||||||||||| ||||||    
T  54164595 ctcaatgtagagcagtgactaatttcataaatgaaaaattttagagggaccgaaaacctaaaaaatattttatagagactaaaatcaaatgttggtatat 54164694  T
Q  373 ttagggagactatttacttatttaacccta 402  Q
    ||||||||||||||||||||||||||||||    
T  54164695 ttagggagactatttacttatttaacccta 54164724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 281 - 406
Target Start/End: Complemental strand, 13552790 - 13552663
Alignment:
Q  281 tagagtagagactaatttcatggatgaaaaatgttagagcaacc-caagcttaagaaatattttaggaaaact-aaaatcaaatgttagtatatttaggg 378  Q
    ||||| |||||||||||||||  ||||||||| ||||| | |||  |||||||| |||||||||  |   ||| |||||||||| |||||||||||||||    
T  13552790 tagagcagagactaatttcataaatgaaaaattttagaacgaccaaaagcttaaaaaatattttttggggactaaaaatcaaatattagtatatttaggg 13552691  T
Q  379 agactatttacttatttaaccctaaaat 406  Q
    ||| |||||||||||||||||| |||||    
T  13552690 agattatttacttatttaacccaaaaat 13552663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 335 - 405
Target Start/End: Original strand, 30941514 - 30941583
Alignment:
Q  335 aaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 405  Q
    |||||||||||||| |||||||||||| |||||||||||||| |||| |||||||||||||||| ||||||    
T  30941514 aaatattttaggaagactaaaatcaaa-gttagtatatttagagagattatttacttatttaactctaaaa 30941583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 281 - 406
Target Start/End: Complemental strand, 54164586 - 54164460
Alignment:
Q  281 tagagtagagactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttaggga 379  Q
    |||||||||||||||||||||  ||||||||| |||||   ||| || || ||| | |||||||| ||  |||||||||||||||| ||||||||||       
T  54164586 tagagtagagactaatttcataaatgaaaaattttagatggaccaaaagcctaaaatatattttatgaggactaaaatcaaatgttggtatatttagaac 54164487  T
Q  380 gactatttacttatttaaccctaaaat 406  Q
    |||||||||||||||||||||| ||||    
T  54164486 gactatttacttatttaacccttaaat 54164460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 281 - 401
Target Start/End: Complemental strand, 7513647 - 7513526
Alignment:
Q  281 tagagtagagactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttag-gg 378  Q
    ||||||| |||||||||||||  ||||||||| |||||  |||| || || ||| |||||||||| |  || |||||| ||||||| |||||||||| ||    
T  7513647 tagagtaaagactaatttcataaatgaaaaattttagatgaaccaaaagcctaaaaaatattttaaggtaattaaaattaaatgttggtatatttagagg 7513548  T
Q  379 agactatttacttatttaaccct 401  Q
    || ||||||||||||||||||||    
T  7513547 ag-ctatttacttatttaaccct 7513526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 7513525 - 7513574
Alignment:
Q  153 aaggattaaataagtaaattgctcccctaaataaaccaacatttaatttt 202  Q
    |||| |||||||||||||| ||||| ||||||| ||||||||||||||||    
T  7513525 aagggttaaataagtaaatagctcctctaaatataccaacatttaatttt 7513574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 281 - 400
Target Start/End: Original strand, 28687597 - 28687716
Alignment:
Q  281 tagagtagagactaatttcatggatgaaaaatgttagagcaacccaagct-taagaaatattttaggaaaactaaaatcaaatgttagtatatttaggga 379  Q
    ||||| || ||||||||| || |||||||||| ||||||  ||| || |  ||| |||||||||||   |||||||||||||||||  ||||||||  ||    
T  28687597 tagagcagggactaattttattgatgaaaaattttagagggaccaaaaccctaaaaaatattttagagtaactaaaatcaaatgttgatatatttaaaga 28687696  T
Q  380 gactatttacttatttaaccc 400  Q
     ||||||||||||||||||||    
T  28687697 -actatttacttatttaaccc 28687716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 398
Target Start/End: Complemental strand, 32185331 - 32185283
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaac 398  Q
    |||||||||||||||| |||||||||| | ||||||||||| |||||||    
T  32185331 actaaaatcaaatgttggtatatttagagggactatttactcatttaac 32185283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 399
Target Start/End: Original strand, 13552868 - 13552917
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaacc 399  Q
    ||||||||||||| ||  ||||||||||  ||||||||||||||||||||    
T  13552868 actaaaatcaaatattgatatatttaggaggactatttacttatttaacc 13552917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 331 - 399
Target Start/End: Complemental strand, 17250531 - 17250463
Alignment:
Q  331 taagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaacc 399  Q
    |||||||||||||| |  || |||||||||||||| |||||||| |   ||| ||||||||||||||||    
T  17250531 taagaaatattttaagggaaataaaatcaaatgtttgtatatttggaaggaccatttacttatttaacc 17250463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 326 - 405
Target Start/End: Complemental strand, 4304217 - 4304138
Alignment:
Q  326 aagcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 405  Q
    ||||||||||||||||||||||  |||||||||||||||| ||||||||| || ||| ||||| ||||||||||||||||    
T  4304217 aagcttaagaaatattttaggaggactaaaatcaaatgttggtatatttaaggggacgatttatttatttaaccctaaaa 4304138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 350 - 401
Target Start/End: Original strand, 4304353 - 4304404
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccct 401  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  4304353 actaaaatcaaatgttggtatatttagggagattatttacttatttaaccct 4304404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 6931146 - 6931198
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaacccta 402  Q
    |||||||||||||||||||||||||| |  |||||||||||||||||||||||    
T  6931146 actaaaatcaaatgttagtatatttaagaggactatttacttatttaacccta 6931198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 45405092 - 45405166
Alignment:
Q  336 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaattaat 410  Q
    |||||||||||   |||||||||||||||||||||||||| || |||  || |||||||||||| ||||||||||    
T  45405092 aatattttagggggactaaaatcaaatgttagtatatttaaggggacagttaacttatttaaccataaaattaat 45405166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 30172121 - 30172069
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaacccta 402  Q
    ||||||||||||||||  ||||||||||| ||| |||||||||||||||||||    
T  30172121 actaaaatcaaatgttgatatatttagggggaccatttacttatttaacccta 30172069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 248 - 377
Target Start/End: Complemental strand, 44094306 - 44094174
Alignment:
Q  248 ttttatccatgaaattagttcatgct-ctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacc-caagcttaagaaatattttag 345  Q
    ||||||||||||||||||| |||| | |||| |||||||||| ||||||||||||| || ||| || ||| ||  |||  |||| |||||||||||||||    
T  44094306 ttttatccatgaaattagtccatgtttctcaatgtagagtagggactaatttcatgaataaaatattttaaagggaccaaaagcctaagaaatattttag 44094207  T
Q  346 gaaaactaaaatcaaatg-ttagtatatttagg 377  Q
     |  | |||||||||||| || |||||||||||    
T  44094206 aaggattaaaatcaaatgtttggtatatttagg 44094174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 336 - 399
Target Start/End: Complemental strand, 30430334 - 30430271
Alignment:
Q  336 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaacc 399  Q
    ||||||||||   ||||||||||||||||| |||||||||| | ||| ||||||||||||||||    
T  30430334 aatattttagaggaactaaaatcaaatgttggtatatttagagggaccatttacttatttaacc 30430271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 239
Target Start/End: Complemental strand, 32619044 - 32618958
Alignment:
Q  153 aaggattaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttttgttcctc 239  Q
    |||| |||||||||||||| | ||  ||||||| | |||||||| ||||| ||| || |||||||||| |||||||||| |||||||    
T  32619044 aagggttaaataagtaaatagttcatctaaatatatcaacatttgattttagtctttctaaaatattttttagatttttagttcctc 32618958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 335 - 401
Target Start/End: Original strand, 32618977 - 32619043
Alignment:
Q  335 aaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccct 401  Q
    ||||||||||| || ||||||||||||||||  |||||||||    |||||||||||||||||||||    
T  32618977 aaatattttagaaagactaaaatcaaatgttgatatatttagatgaactatttacttatttaaccct 32619043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 4475169 - 4475108
Alignment:
Q  336 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaa 397  Q
    |||||||||||  || |||||||||||||| |||||||||||  |||| |||||||||||||    
T  4475169 aatattttaggggaattaaaatcaaatgttggtatatttaggaggactttttacttatttaa 4475108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 350 - 399
Target Start/End: Original strand, 30173658 - 30173707
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaacc 399  Q
    ||||||||||||| || ||||||||||||| ||||||| |||||||||||    
T  30173658 actaaaatcaaatattggtatatttagggaaactattttcttatttaacc 30173707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 27614078 - 27614006
Alignment:
Q  336 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaatta 408  Q
    ||||||||| | | |||||||| ||||||| ||||||||||||  |||||||||||  ||||||| |||||||    
T  27614078 aatattttatggagactaaaattaaatgttggtatatttaggggaactatttacttgattaacccaaaaatta 27614006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 402
Target Start/End: Original strand, 43907910 - 43907976
Alignment:
Q  335 aaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaacccta 402  Q
    ||||||||||||   ||||||||||||| |||||||||||| || ||  |||||||||||||||||||    
T  43907910 aaatattttagggggactaaaatcaaatattagtatatttaagg-gatcatttacttatttaacccta 43907976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 351 - 401
Target Start/End: Complemental strand, 19279949 - 19279899
Alignment:
Q  351 ctaaaatcaaatgttagtatatttagggagactatttacttatttaaccct 401  Q
    ||||||||||||||| ||||| ||||||  |||| ||||||||||||||||    
T  19279949 ctaaaatcaaatgttggtatacttaggggaactacttacttatttaaccct 19279899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 400
Target Start/End: Original strand, 25799528 - 25799577
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccc 400  Q
    |||||||| ||||||| |||||||||||||| | |||||||||||||||||    
T  25799528 actaaaattaaatgttggtatatttagggagtc-atttacttatttaaccc 25799577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 25799574 - 25799514
Alignment:
Q  158 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatt 219  Q
    ||||||||||||||  ||||| |||||| |||||||||||||||| |||  |||||||||||    
T  25799574 ttaaataagtaaatgactccc-taaatataccaacatttaattttagtctctttaaaatatt 25799514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 350 - 398
Target Start/End: Complemental strand, 2928144 - 2928096
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaac 398  Q
    |||| ||||||||||| |||||||||||  ||| |||||||||||||||    
T  2928144 actagaatcaaatgttggtatatttaggaggaccatttacttatttaac 2928096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 28725324 - 28725280
Alignment:
Q  354 aaatcaaatgttagtatatttagggagactatttacttatttaac 398  Q
    |||| ||||||| ||||||||| || |||||||||||||||||||    
T  28725324 aaattaaatgttggtatatttatggtgactatttacttatttaac 28725280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 350 - 401
Target Start/End: Original strand, 28725716 - 28725770
Alignment:
Q  350 actaaaatcaaatgttagtat---atttagggagactatttacttatttaaccct 401  Q
    |||||||||||||||| ||||   |||||||| ||| ||||||||||||||||||    
T  28725716 actaaaatcaaatgttggtattatatttagggggaccatttacttatttaaccct 28725770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 336 - 401
Target Start/End: Complemental strand, 12290044 - 12289979
Alignment:
Q  336 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccct 401  Q
    ||||||||||| |  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12290044 aatattttaggcaggctaaaatcaaatgttggtatatttagggagactatttacttatttaaccct 12289979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 336 - 405
Target Start/End: Original strand, 34637616 - 34637685
Alignment:
Q  336 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 405  Q
    |||||||||||  |||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  34637616 aatattttaggggaactaaaatcaaatgttgatatatttagggtgactatttacttatttaaccctaaaa 34637685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 350 - 400
Target Start/End: Complemental strand, 34637475 - 34637425
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccc 400  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  34637475 actaaaatcaaatgttggtatatttatggagactatttacttatttaaccc 34637425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 350 - 405
Target Start/End: Original strand, 13340649 - 13340704
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 405  Q
    |||||||||||||||||||||||||| || |||||||| | |||||||||||||||    
T  13340649 actaaaatcaaatgttagtatatttaaggggactattttcatatttaaccctaaaa 13340704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 331 - 404
Target Start/End: Complemental strand, 6190637 - 6190565
Alignment:
Q  331 taagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaa 404  Q
    |||||||||||| |||| | |||||||||||||||  ||||||||||||||  ||||||||| |||||||||||    
T  6190637 taagaaatatttaaggaga-ctaaaatcaaatgttgatatatttagggagatcatttacttagttaaccctaaa 6190565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 350 - 398
Target Start/End: Complemental strand, 13340493 - 13340445
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaac 398  Q
    |||||||||||||||| ||||||||| || |||||||||||||||||||    
T  13340493 actaaaatcaaatgttggtatatttaaggggactatttacttatttaac 13340445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 336 - 402
Target Start/End: Original strand, 31298916 - 31298982
Alignment:
Q  336 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaacccta 402  Q
    ||||||||||   |||||||||||||| || |||||||||  | |||||||||||||||||||||||    
T  31298916 aatattttagaggaactaaaatcaaatattggtatatttaaagggactatttacttatttaacccta 31298982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 406
Target Start/End: Original strand, 12290174 - 12290230
Alignment:
Q  349 aactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaat 406  Q
    ||||||||| ||||||| |||||||||||| ||  |||||||||||||||||||||||    
T  12290174 aactaaaattaaatgttggtatatttaggg-gatcatttacttatttaaccctaaaat 12290230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 336 - 399
Target Start/End: Original strand, 7359611 - 7359674
Alignment:
Q  336 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaacc 399  Q
    |||||||||||   | |||||||||||||| |||||||||||| ||| | ||||||||||||||    
T  7359611 aatattttagggggagtaaaatcaaatgttggtatatttagggcgacgagttacttatttaacc 7359674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 352 - 402
Target Start/End: Complemental strand, 403355 - 403305
Alignment:
Q  352 taaaatcaaatgttagtatatttagggagactatttacttatttaacccta 402  Q
    |||||| |||| ||||| ||||||| | |||||||||||||||||||||||    
T  403355 taaaattaaatattagtttatttagagggactatttacttatttaacccta 403305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 12289971 - 12290027
Alignment:
Q  146 taaaattaaggattaaataagtaaattgctcccctaaataaaccaacatttaatttt 202  Q
    ||||||||||| |||||||||||||| |   ||||||||| |||||||||| |||||    
T  12289971 taaaattaagggttaaataagtaaatagtctccctaaatataccaacatttgatttt 12290027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 12290221 - 12290178
Alignment:
Q  158 ttaaataagtaaattgctcccctaaataaaccaacatttaatttt 202  Q
    |||||||||||||| | ||||||||||| ||||||||||||||||    
T  12290221 ttaaataagtaaat-gatcccctaaatataccaacatttaatttt 12290178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 336 - 401
Target Start/End: Original strand, 13657741 - 13657806
Alignment:
Q  336 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccct 401  Q
    |||||||||||||||||||||||||||||||||||||||  |  ||||||||||||||||||||||    
T  13657741 aatattttaggaaaactaaaatcaaatgttagtatatttcagaggactatttacttatttaaccct 13657806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 274 - 398
Target Start/End: Original strand, 22297891 - 22298016
Alignment:
Q  274 ctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaag-cttaagaaatattttaggaaaactaaaatcaaatgttagtatat 372  Q
    |||| |||||||  ||||||||||||||  ||||||||| ||||||  ||| ||  ||||| |||||||||| |   |||||||||||||||||||||||    
T  22297891 ctcaatgtagagctgagactaatttcataaatgaaaaattttagagggaccaaaaacttaaaaaatattttaaggggactaaaatcaaatgttagtatat 22297990  T
Q  373 ttagggagactatttacttatttaac 398  Q
    |||||| ||| |||||||||||||||    
T  22297991 ttagggggaccatttacttatttaac 22298016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 279 - 404
Target Start/End: Complemental strand, 6843204 - 6843078
Alignment:
Q  279 tgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaagct-taagaaatattttaggaaaactaaaatcaaatgttagtatatttagg 377  Q
    ||||||| || || ||||||||| |||||||||| ||||||  ||| ||  | |||| |||||| |||||  |||||||||||||||| |||||||||      
T  6843204 tgtagagcagggattaatttcatagatgaaaaattttagagggaccaaaaatctaaggaatattctaggaggactaaaatcaaatgtttgtatatttaaa 6843105  T
Q  378 gagactatttacttatttaaccctaaa 404  Q
    ||||||||||| |||||||||||||||    
T  6843104 gagactatttatttatttaaccctaaa 6843078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 335 - 406
Target Start/End: Complemental strand, 29673356 - 29673285
Alignment:
Q  335 aaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaat 406  Q
    |||||||||||||  |||||||||||||||| ||||||||| || ||| |||||||||||||||||| ||||    
T  29673356 aaatattttaggaggactaaaatcaaatgttggtatatttaaggggaccatttacttatttaacccttaaat 29673285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 256 - 405
Target Start/End: Original strand, 2344575 - 2344725
Alignment:
Q  256 atgaaattagttcatgctctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaa 354  Q
    ||||||||||| |||| ||||| ||||||| ||||| |||||| |||||| |||||| ||| ||  ||| || |  |||| ||||| ||||   ||||||    
T  2344575 atgaaattagtccatgttctcaatgtagagcagagattaatttaatggataaaaaattttaaagggaccaaaagactaaggaatatgttagaggaactaa 2344674  T
Q  355 aatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 405  Q
    ||| ||||||| || ||||||||  ||||||||||||||||||||| ||||    
T  2344675 aataaaatgttggtctatttaggaggactatttacttatttaacccaaaaa 2344725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 329 - 397
Target Start/End: Original strand, 29673723 - 29673791
Alignment:
Q  329 cttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaa 397  Q
    |||||||||||||||||   ||||||||||||||||| ||||||||||||  || ||||||||||||||    
T  29673723 cttaagaaatattttagaggaactaaaatcaaatgtttgtatatttaggggaaccatttacttatttaa 29673791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 281 - 406
Target Start/End: Original strand, 25906094 - 25906219
Alignment:
Q  281 tagagtagagactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttaggga 379  Q
    ||||| |||||||||||||||  ||||||||| ||||||  ||| || || |||  ||||||| |||   ||||||||||||||||  ||||||||||      
T  25906094 tagagcagagactaatttcataaatgaaaaat-ttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggag 25906192  T
Q  380 gactatttacttatttaaccctaaaat 406  Q
    || ||||||||||||||||||||||||    
T  25906193 gattatttacttatttaaccctaaaat 25906219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 280 - 396
Target Start/End: Complemental strand, 17047976 - 17047859
Alignment:
Q  280 gtagagtagagactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttaggg 378  Q
    |||||| ||||||||| |||||  ||||||||| ||||||  ||| || | ||||  ||||||||||||   |||||||||||| || |||||||||| |    
T  17047976 gtagagcagagactaacttcataaatgaaaaattttagagggaccaaaagtttaaagaatattttaggagggctaaaatcaaatattggtatatttagag 17047877  T
Q  379 agactatttacttattta 396  Q
    ||||||||||| ||||||    
T  17047876 agactatttacatattta 17047859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 350 - 400
Target Start/End: Complemental strand, 2846623 - 2846573
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccc 400  Q
    ||||||||||||||||  ||||||||||| ||| |||||||||||||||||    
T  2846623 actaaaatcaaatgttgatatatttagggggaccatttacttatttaaccc 2846573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 399
Target Start/End: Complemental strand, 25906085 - 25905959
Alignment:
Q  274 ctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatat 372  Q
    |||| ||||||| || ||||||||| || |||||||||| ||||||  ||| || || || |||||| ||||||   |||||||||||||||| ||||||    
T  25906085 ctcaatgtagagcagggactaattttatagatgaaaaattttagagggaccaaaagcctatgaaatactttagggggactaaaatcaaatgttggtatat 25905986  T
Q  373 ttagggagactatttacttatttaacc 399  Q
     || || ||  ||||||||||||||||    
T  25905985 ataaggggatcatttacttatttaacc 25905959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 2846941 - 2847009
Alignment:
Q  334 gaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaa 403  Q
    |||||||||||  | ||||||||||||||||| || ||| |||| |||| ||||||||||||||||||||    
T  2846941 gaaatattttaaaagaactaaaatcaaatgttggtttatatagg-agaccatttacttatttaaccctaa 2847009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 350 - 399
Target Start/End: Complemental strand, 2858460 - 2858411
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaacc 399  Q
    ||||||||||||||||  ||||||||||| ||| ||||||||||||||||    
T  2858460 actaaaatcaaatgttgatatatttagggggaccatttacttatttaacc 2858411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 2858778 - 2858846
Alignment:
Q  334 gaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaa 403  Q
    |||||||||||  | ||||||||||||||||| || ||| |||| |||| ||||||||||||||||||||    
T  2858778 gaaatattttaaaagaactaaaatcaaatgttggtttatatagg-agaccatttacttatttaaccctaa 2858846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 398
Target Start/End: Complemental strand, 22297812 - 22297764
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaac 398  Q
    ||||||||||||||||  ||||||||| | |||||||||||||||||||    
T  22297812 actaaaatcaaatgttgatatatttagagggactatttacttatttaac 22297764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 29673801 - 29673725
Alignment:
Q  148 aaattaaggattaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttctta 224  Q
    |||| |||| |||||||||||||| | ||||||||||| || ||||||| ||||| || | | ||||||||||||||    
T  29673801 aaataaaggtttaaataagtaaatggttcccctaaatatacaaacatttgattttagttcctctaaaatatttctta 29673725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 2847003 - 2846941
Alignment:
Q  158 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttc 221  Q
    |||||||||||||| | || |||| |||||||||||||| ||||| || |||||||||||||||    
T  2847003 ttaaataagtaaatgg-tctcctatataaaccaacatttgattttagttcttttaaaatatttc 2846941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 2858840 - 2858778
Alignment:
Q  158 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttc 221  Q
    |||||||||||||| | || |||| |||||||||||||| ||||| || |||||||||||||||    
T  2858840 ttaaataagtaaatgg-tctcctatataaaccaacatttgattttagttcttttaaaatatttc 2858778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 376
Target Start/End: Original strand, 15773760 - 15773799
Alignment:
Q  337 atattttaggaaaactaaaatcaaatgttagtatatttag 376  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  15773760 atattttaggaagactaaaatcaattgttagtatatttag 15773799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 350 - 405
Target Start/End: Original strand, 20510501 - 20510556
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 405  Q
    ||||||||||||||||  |||||||| |  |||||||||||| |||||||||||||    
T  20510501 actaaaatcaaatgtttatatatttatgaggactatttacttttttaaccctaaaa 20510556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 405
Target Start/End: Complemental strand, 13657613 - 13657544
Alignment:
Q  336 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 405  Q
    ||||||||||   ||||||||||||||||| |||||||||  | ||| ||||| |||||||| |||||||    
T  13657613 aatattttagaggaactaaaatcaaatgtttgtatatttaaagggaccatttatttatttaatcctaaaa 13657544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 29673287 - 29673356
Alignment:
Q  151 ttaaggattaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatattt 220  Q
    |||||| |||||||||||||| |  ||| |||||| |||||||||| ||||| |||||  ||||||||||    
T  29673287 ttaagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcctcctaaaatattt 29673356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 352 - 404
Target Start/End: Original strand, 5161109 - 5161161
Alignment:
Q  352 taaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaa 404  Q
    ||||||||||||||| |||||||| | | |  |||||||||||||||||||||    
T  5161109 taaaatcaaatgttaatatatttaagaaaatcatttacttatttaaccctaaa 5161161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 274 - 401
Target Start/End: Original strand, 17047984 - 17048111
Alignment:
Q  274 ctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatat 372  Q
    |||| ||||||| |||||||||||| || |||||||  | |||||| |||| || || ||| |||| |||||||   |||||| ||||||||| ||||||    
T  17047984 ctcaatgtagagcagagactaatttaatagatgaaattttttagaggaaccaaaagcctaaaaaatcttttagggggactaaa-tcaaatgttggtatat 17048082  T
Q  373 ttagggagactatttacttatttaaccct 401  Q
    ||| || ||  ||| ||||||||||||||    
T  17048083 ttaaggggatcattcacttatttaaccct 17048111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 329 - 401
Target Start/End: Complemental strand, 24490764 - 24490693
Alignment:
Q  329 cttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccct 401  Q
    ||||||| |||||||||  | |||||||||||||||| ||||| ||||   ||| ||||||||||||||||||    
T  24490764 cttaagagatattttagagagactaaaatcaaatgttggtata-ttagaaggaccatttacttatttaaccct 24490693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 256 - 403
Target Start/End: Original strand, 30749051 - 30749199
Alignment:
Q  256 atgaaattagttcatgctctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacc-caagcttaagaaatattttaggaaaactaa 354  Q
    ||||||||||| |||| ||||| ||||||| || || |||||| ||||||||||||| |||||| ||||  || | ||| |||||||||||   || |||    
T  30749051 atgaaattagtccatgttctcaatgtagagcagggattaattttatggatgaaaaattttagaggaaccaaaaacataaaaaatattttagaggaattaa 30749150  T
Q  355 aatcaaatgttagtatatttagggagactatttacttatttaaccctaa 403  Q
    |||||||||||  ||||||||||  || ||||||| |||||||||||||    
T  30749151 aatcaaatgttgatatatttaggaggattatttacgtatttaaccctaa 30749199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 256 - 403
Target Start/End: Original strand, 30770502 - 30770650
Alignment:
Q  256 atgaaattagttcatgctctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacc-caagcttaagaaatattttaggaaaactaa 354  Q
    ||||||||||| |||| ||||| ||||||| || || |||||| ||||||||||||| |||||| ||||  || | ||| |||||||||||   || |||    
T  30770502 atgaaattagtccatgttctcaatgtagagcagggattaattttatggatgaaaaattttagaggaaccaaaaacataaaaaatattttagaggaattaa 30770601  T
Q  355 aatcaaatgttagtatatttagggagactatttacttatttaaccctaa 403  Q
    |||||||||||  ||||||||||  || ||||||| |||||||||||||    
T  30770602 aatcaaatgttgatatatttaggaggattatttacgtatttaaccctaa 30770650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 350 - 415
Target Start/End: Complemental strand, 23485720 - 23485655
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaattaattttag 415  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| ||||| || ||| |||||||    
T  23485720 actaaaatcaaatattaatatatttagggagactatttacttattcaacccaaagatttattttag 23485655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 290 - 402
Target Start/End: Original strand, 14760019 - 14760131
Alignment:
Q  290 gactaatttcatggatgaaaaatgttagagcaacccaagcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttac 389  Q
    |||||||||||| |||||||||| |||| | | |  |||| ||| ||||||||||||   | |||||||||||||| ||||||||| || ||  ||||||    
T  14760019 gactaatttcatagatgaaaaattttaggggaccaaaagcctaaaaaatattttagggggattaaaatcaaatgttggtatatttaaggggatcatttac 14760118  T
Q  390 ttatttaacccta 402  Q
    |||||||||||||    
T  14760119 ttatttaacccta 14760131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 336 - 400
Target Start/End: Complemental strand, 30746837 - 30746773
Alignment:
Q  336 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccc 400  Q
    ||||||||| | ||||||||||||||| |||||||||||| || ||| |||||||||||||||||    
T  30746837 aatattttaaggaaactaaaatcaaatattagtatatttaaggggaccatttacttatttaaccc 30746773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 336 - 400
Target Start/End: Complemental strand, 30768288 - 30768224
Alignment:
Q  336 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccc 400  Q
    ||||||||| | ||||||||||||||| |||||||||||| || ||| |||||||||||||||||    
T  30768288 aatattttaaggaaactaaaatcaaatattagtatatttaaggggaccatttacttatttaaccc 30768224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 274 - 395
Target Start/End: Complemental strand, 13765683 - 13765561
Alignment:
Q  274 ctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaag-cttaagaaatattttaggaaaactaaaatcaaatgttagtatat 372  Q
    |||| |||||||||| ||||||||||||  ||||||||| ||| ||  ||| ||  | |||  ||||||||| |   |||||||||||||||| ||||||    
T  13765683 ctcaatgtagagtagggactaatttcataaatgaaaaatattaaagggaccaaaaacctaaagaatattttatggggactaaaatcaaatgttggtatat 13765584  T
Q  373 ttagggagactatttacttattt 395  Q
    ||||||||| |||||||||||||    
T  13765583 ttagggagattatttacttattt 13765561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 336 - 400
Target Start/End: Complemental strand, 30749015 - 30748951
Alignment:
Q  336 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccc 400  Q
    |||||||||||   ||||||||||||| || |||||||||||  ||| |||||||||||||||||    
T  30749015 aatattttagggggactaaaatcaaatatttgtatatttaggaggaccatttacttatttaaccc 30748951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 336 - 400
Target Start/End: Complemental strand, 30770466 - 30770402
Alignment:
Q  336 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccc 400  Q
    |||||||||||   ||||||||||||| || |||||||||||  ||| |||||||||||||||||    
T  30770466 aatattttagggggactaaaatcaaatatttgtatatttaggaggaccatttacttatttaaccc 30770402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 406
Target Start/End: Original strand, 15393345 - 15393416
Alignment:
Q  335 aaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaat 406  Q
    ||||||||||||   ||| |||||||||||| |||||||| ||| ||| |||||||||||||| || |||||    
T  15393345 aaatattttagggggactgaaatcaaatgttggtatatttcgggggaccatttacttatttaatccaaaaat 15393416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 336 - 402
Target Start/End: Original strand, 16706527 - 16706596
Alignment:
Q  336 aatattttaggaaaactaaaatcaaatgttagt---atatttagggagactatttacttatttaacccta 402  Q
    |||||||||||   |||||||||||||||| ||   |||||||||| |||||||||| ||||||||||||    
T  16706527 aatattttagggggactaaaatcaaatgttggtggtatatttagggggactatttacatatttaacccta 16706596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 30746868 - 30746926
Alignment:
Q  252 atccatgaaattagttcatgctctcattgtagagtagagactaatttcatggatgaaaa 310  Q
    ||||||||||||||| | || ||||| ||||||| |  |||||||||||||||||||||    
T  30746868 atccatgaaattagtccctgttctcaatgtagagcatggactaatttcatggatgaaaa 30746926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 30768319 - 30768377
Alignment:
Q  252 atccatgaaattagttcatgctctcattgtagagtagagactaatttcatggatgaaaa 310  Q
    ||||||||||||||| | || ||||| ||||||| |  |||||||||||||||||||||    
T  30768319 atccatgaaattagtccctgttctcaatgtagagcatggactaatttcatggatgaaaa 30768377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 51900178 - 51900116
Alignment:
Q  336 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaac 398  Q
    ||||||||| | |||||||||||||||||| | ||||||||   ||| |||||||||||||||    
T  51900178 aatattttaaggaaactaaaatcaaatgttggaatatttagaaggaccatttacttatttaac 51900116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 402
Target Start/End: Complemental strand, 16706462 - 16706333
Alignment:
Q  274 ctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatat 372  Q
    |||| ||||||  ||||||||||||||| |||||||||| |||||   ||| || || |||  || |||||||    |||||||||||||||| ||||||    
T  16706462 ctcaatgtagaacagagactaatttcatagatgaaaaattttagaaggaccaaaagcctaaagaaaattttagagggactaaaatcaaatgttggtatat 16706363  T
Q  373 ttagggagactatttacttatttaacccta 402  Q
    |||| | || ||||| || |||||||||||    
T  16706362 ttagagggaatattttctcatttaacccta 16706333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 412
Target Start/End: Complemental strand, 20171457 - 20171377
Alignment:
Q  331 taagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaattaattt 412  Q
    |||||||||||||||    |||||||||||||||| ||||| ||| |||||| ||||||||||| ||| || |||| |||||    
T  20171457 taagaaatattttagagggactaaaatcaaatgttggtata-ttaaggagaccatttacttattcaactcttaaataaattt 20171377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 403
Target Start/End: Original strand, 22679532 - 22679585
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaa 403  Q
    |||||||||||||||| |||||||||||| ||   |||||||||||||| ||||    
T  22679532 actaaaatcaaatgttggtatatttagggggatcgtttacttatttaactctaa 22679585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 402
Target Start/End: Complemental strand, 39785267 - 39785218
Alignment:
Q  353 aaaatcaaatgttagtatatttagggagactatttacttatttaacccta 402  Q
    ||||| ||||||| |||| ||||||| |||||||||||||||||| ||||    
T  39785267 aaaattaaatgttggtatttttagggggactatttacttatttaatccta 39785218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 39785219 - 39785268
Alignment:
Q  154 aggattaaataagtaaattgctcccctaaataaaccaacatttaattttt 203  Q
    |||||||||||||||||| |  |||||||| | |||||||||||||||||    
T  39785219 aggattaaataagtaaatagtccccctaaaaataccaacatttaattttt 39785268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 350 - 398
Target Start/End: Original strand, 23528254 - 23528302
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaac 398  Q
    |||||||| |||||||  |||||||||  ||||||||||||||||||||    
T  23528254 actaaaattaaatgttgatatatttagaaagactatttacttatttaac 23528302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 30746993 - 30746941
Alignment:
Q  179 ctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttt 231  Q
    ||||||| |||||||||| ||||| |||| || |||||||| |||||||||||    
T  30746993 ctaaatataccaacatttcattttagtcccttcaaaatattccttagattttt 30746941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 30768444 - 30768392
Alignment:
Q  179 ctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttt 231  Q
    ||||||| |||||||||| ||||| |||| || |||||||| |||||||||||    
T  30768444 ctaaatataccaacatttcattttagtcccttcaaaatattccttagattttt 30768392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 350 - 405
Target Start/End: Original strand, 7328503 - 7328558
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 405  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7328503 actaaagtcaaatgttagtatatttagggagactatttacttatttaacccaaaaa 7328558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 281 - 397
Target Start/End: Original strand, 981053 - 981169
Alignment:
Q  281 tagagtagagactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttaggga 379  Q
    ||||| |||||||||||||||  ||||||||| ||||||  ||| || || |||  |||||||||||  | ||||||||||||||| |||||||||| ||    
T  981053 tagagcagagactaatttcataaatgaaaaattttagagggaccaaaagcctaaagaatattttagggga-ctaaaatcaaatgttggtatatttagaga 981151  T
Q  380 gactatttacttatttaa 397  Q
    ||||||||||||||||||    
T  981152 gactatttacttatttaa 981169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 326 - 399
Target Start/End: Original strand, 37897734 - 37897807
Alignment:
Q  326 aagcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaacc 399  Q
    |||| |||||||||||||||||  |||||||  ||||||| |||||||||| |||||| |||||||||||||||    
T  37897734 aagcctaagaaatattttaggaggactaaaacaaaatgttggtatatttagtgagactttttacttatttaacc 37897807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 326 - 402
Target Start/End: Original strand, 16192595 - 16192671
Alignment:
Q  326 aagcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaacccta 402  Q
    |||| |||| ||||||||||| | ||||||||||||||||  |||||||| |  |||||||||||||||||||||||    
T  16192595 aagcctaaggaatattttagggagactaaaatcaaatgttgatatatttaagaggactatttacttatttaacccta 16192671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 274 - 401
Target Start/End: Complemental strand, 32483773 - 32483645
Alignment:
Q  274 ctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacc-caagcttaagaaatattttaggaaaactaaaatcaaatgttagtatat 372  Q
    |||| ||||||||||||||| |||||||  ||||||| | |||||| ||||  |||| ||| |||||||||| |  || ||||||||||||| |||||||    
T  32483773 ctcaatgtagagtagagactgatttcataaatgaaaatttttagagaaaccaaaagcctaaaaaatattttatgggaattaaaatcaaatgtcagtatat 32483674  T
Q  373 ttagggagactatttacttatttaaccct 401  Q
    |||  |  | |||||||||||||||||||    
T  32483673 ttaaaggaattatttacttatttaaccct 32483645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 352 - 410
Target Start/End: Original strand, 4921371 - 4921429
Alignment:
Q  352 taaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaattaat 410  Q
    ||||||||||||||  ||||||||| ||||||||||| ||||||||||||||| |||||    
T  4921371 taaaatcaaatgttgatatatttagagagactatttatttatttaaccctaaatttaat 4921429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 16127982 - 16127920
Alignment:
Q  336 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaac 398  Q
    ||||||||||||  |||||||| ||||||| ||||||||| || |||||||||||||||||||    
T  16127982 aatattttaggaggactaaaattaaatgttggtatatttaaggggactatttacttatttaac 16127920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 268 - 401
Target Start/End: Complemental strand, 37897708 - 37897574
Alignment:
Q  268 catgctctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacc-caagcttaagaaatattttaggaaaactaaaatcaaatgtta 366  Q
    |||| ||||| ||||||| |||||||||||||||||||||||| | ||||||  |||  || | |||| ||||||||||    | ||||||||||||||     
T  37897708 catgttctcaatgtagagcagagactaatttcatggatgaaaatttttagagggaccgaaaacctaaggaatattttagagggagtaaaatcaaatgttg 37897609  T
Q  367 gtatatttagggagactatttacttatttaaccct 401  Q
    || ||||||||  | |||||| |||||||||||||    
T  37897608 gtctatttaggagggctatttccttatttaaccct 37897574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 354 - 407
Target Start/End: Original strand, 43130353 - 43130405
Alignment:
Q  354 aaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaatt 407  Q
    |||||||||||  |||||||||||||||| ||||||||||||||||||||||||    
T  43130353 aaatcaaatgtg-gtatatttagggagaccatttacttatttaaccctaaaatt 43130405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 353 - 401
Target Start/End: Complemental strand, 12874727 - 12874679
Alignment:
Q  353 aaaatcaaatgttagtatatttagggagactatttacttatttaaccct 401  Q
    ||||||||||||| ||||||||||||| || ||||||||||||||||||    
T  12874727 aaaatcaaatgttggtatatttagggaaaccatttacttatttaaccct 12874679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 18509547 - 18509495
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaacccta 402  Q
    |||||||||||||||| |||||||||||| ||| ||||| |||||||||||||    
T  18509547 actaaaatcaaatgttggtatatttagggggaccatttaattatttaacccta 18509495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 329 - 397
Target Start/End: Complemental strand, 27847928 - 27847860
Alignment:
Q  329 cttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaa 397  Q
    |||||| ||||||||| |   |||||||||||||||| ||||||||| || ||||||||||||||||||    
T  27847928 cttaaggaatattttaagtggactaaaatcaaatgttggtatatttatggggactatttacttatttaa 27847860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 350 - 405
Target Start/End: Complemental strand, 32945662 - 32945607
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 405  Q
    |||||||||||||||| |||||||| ||| |||||||||| |||||||||| ||||    
T  32945662 actaaaatcaaatgttggtatattttgggggactatttacctatttaacccaaaaa 32945607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 231
Target Start/End: Original strand, 12874674 - 12874756
Alignment:
Q  149 aattaaggattaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttt 231  Q
    |||| ||| |||||||||||||| | | ||||||||| |||||||||| ||||| |||| ||||||||||  |||||| ||||    
T  12874674 aattgagggttaaataagtaaatggtttccctaaatataccaacatttgattttggtccctttaaaatatcccttagactttt 12874756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 350 - 400
Target Start/End: Complemental strand, 25330610 - 25330560
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccc 400  Q
    ||||||||||||||||  | ||||||||| |||||||||||||||||||||    
T  25330610 actaaaatcaaatgttgatgtatttagggggactatttacttatttaaccc 25330560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 351 - 401
Target Start/End: Original strand, 39159300 - 39159350
Alignment:
Q  351 ctaaaatcaaatgttagtatatttagggagactatttacttatttaaccct 401  Q
    ||||||||||||||||||||||||| |  ||||||| ||||||||||||||    
T  39159300 ctaaaatcaaatgttagtatatttaagaggactattaacttatttaaccct 39159350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 350 - 407
Target Start/End: Original strand, 12874886 - 12874943
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaatt 407  Q
    ||||||||||||| || |||||||| || |||||||||||||||||||| | ||||||    
T  12874886 actaaaatcaaatattggtatatttgggaagactatttacttatttaacgcaaaaatt 12874943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 281 - 389
Target Start/End: Complemental strand, 35926844 - 35926736
Alignment:
Q  281 tagagtagagactaatttcatggatgaaaaatgttagagcaacccaag-cttaagaaatattttaggaaaactaaaatcaaatgttagtatatttaggga 379  Q
    |||||||||||||||||||||  ||||||  | |||||| |||  ||  | ||| |||||||||| | | |||||||||||||||| ||||||||||||     
T  35926844 tagagtagagactaatttcataaatgaaatgttttagaggaactaaaaacctaaaaaatattttatggagactaaaatcaaatgttggtatatttaggg- 35926746  T
Q  380 gactatttac 389  Q
    ||||||||||    
T  35926745 gactatttac 35926736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 407
Target Start/End: Complemental strand, 30714187 - 30714116
Alignment:
Q  335 aaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaatt 407  Q
    |||||||||| ||| ||||||||||||||||  |||||||| || ||| |||||| ||||||||||| |||||    
T  30714187 aaatattttaagaagactaaaatcaaatgttgatatatttaaggggaccatttac-tatttaaccctcaaatt 30714116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 350 - 405
Target Start/End: Complemental strand, 39786366 - 39786311
Alignment:
Q  350 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 405  Q
    |||||||||||||||| |||||||||    || |||||||||||||||||||||||    
T  39786366 actaaaatcaaatgttggtatatttaataggattatttacttatttaaccctaaaa 39786311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 16126284 - 16126222
Alignment:
Q  336 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaac 398  Q
    |||| |||||||  |||||||| ||||||| ||||||||| || |||| ||||||||||||||    
T  16126284 aataatttaggaggactaaaattaaatgttggtatatttaaggggactgtttacttatttaac 16126222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 16127921 - 16127982
Alignment:
Q  158 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatt 219  Q
    |||||||||||||| |  ||| |||||| |||||||||||||||| |||||  |||||||||    
T  16127921 ttaaataagtaaatagtccccttaaatataccaacatttaattttagtcctcctaaaatatt 16127982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 27847857 - 27847926
Alignment:
Q  155 ggattaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttctta 224  Q
    ||||||||||||||||| |  ||| |||||| |||||||||| ||||| ||||  |||||||||| ||||    
T  27847857 ggattaaataagtaaatagtccccataaatataccaacatttgattttagtccacttaaaatattcctta 27847926  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 40152702 - 40152782
Alignment:
Q  158 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttttgttcctc 239  Q
    |||||||||||||| | |||  |||||| || ||||||| ||||| |||||  ||||||||| |||||||||||||| ||||    
T  40152702 ttaaataagtaaatgg-tcctttaaatatacaaacattttattttagtcctcctaaaatattccttagattttttgtccctc 40152782  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 353 - 401
Target Start/End: Original strand, 17368879 - 17368927
Alignment:
Q  353 aaaatcaaatgttagtatatttagggagactatttacttatttaaccct 401  Q
    ||||||||||||| ||||||||| |||||| || |||||||||| ||||    
T  17368879 aaaatcaaatgttggtatatttaaggagaccatatacttatttagccct 17368927  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 25330563 - 25330639
Alignment:
Q  158 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttttgt 234  Q
    |||||||||||||| |  |||||||||| | |||||||| ||||| |||| | |||||| ||  |||||||||||||    
T  25330563 ttaaataagtaaatagtccccctaaatacatcaacatttgattttagtccctctaaaattttctttagattttttgt 25330639  T

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Target: scaffold0025 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 336 - 401
Target Start/End: Original strand, 64017 - 64082
Alignment:
Q  336 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccct 401  Q
    |||||||||||  ||||||||| ||||||| |||||||||||||||||||||||| ||||||||||    
T  64017 aatattttaggggaactaaaattaaatgttggtatatttagggagactatttactgatttaaccct 64082  T

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Target: scaffold0042 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 290 - 401
Target Start/End: Complemental strand, 30421 - 30310
Alignment:
Q  290 gactaatttcatggatgaaaaatgttagagcaacccaagcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttac 389  Q
    |||||||||||| |||||||  | |||||| | |  ||||||||| ||||||||  | | |||||||||||||||||||||||||| || ||| ||| ||    
T  30421 gactaatttcattgatgaaattttttagaggaccaaaagcttaagtaatatttttaggagactaaaatcaaatgttagtatatttatggggaccattcac 30322  T
Q  390 ttatttaaccct 401  Q
    ||||||||||||    
T  30321 ttatttaaccct 30310  T

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Target: scaffold0042; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 284 - 389
Target Start/End: Original strand, 30697 - 30802
Alignment:
Q  284 agtagagactaatttcatggatgaaaaatgttagagcaacccaagcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagact 383  Q
    ||||| ||||||||| ||||||||||| | |||||| | |  || |||||  ||||||||  | | ||||||||||||||||| |||||||| |||||||    
T  30697 agtagggactaatttgatggatgaaaatttttagaggaccaaaaacttaaataatatttttaggagactaaaatcaaatgttattatatttaaggagact 30796  T
Q  384 atttac 389  Q
    ||||||    
T  30797 atttac 30802  T

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Target: scaffold0328 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 11060 - 11009
Alignment:
Q  349 aactaaaatcaaatgttagtatatttagggagactatttacttatttaaccct 401  Q
    |||||||||||| |||||||||||||| | | |||||||||||||||||||||    
T  11060 aactaaaatcaactgttagtatattta-gaatactatttacttatttaaccct 11009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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