View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21009_low_11 (Length: 329)
Name: NF21009_low_11
Description: NF21009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21009_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 317
Target Start/End: Complemental strand, 43210445 - 43210147
Alignment:
| Q |
19 |
tatttctccaacaaatcgtatttttaaccccaactacatcataatttacatgatcatatttattagagaaaacttgatgccataatgcatccttctccct |
118 |
Q |
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| T |
43210445 |
tatttctccaacaaatcgtatttttaaccccaactacatcatcatttacatgatcatatttattagacaaaacttgatgccataatgcatccttctccct |
43210346 |
T |
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| Q |
119 |
ccttaacctccaaaaccatagttgtgtttgttatgcctttcacatctttgtttttgttggttatgacaaagatttatatatgtttgtctttttccataaa |
218 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43210345 |
ccttaacctccaaaaccatagttgtgtatgttatgcctttcacatctttgtttttgttggttatgacaaagatttatatatgtttgtctttttccataaa |
43210246 |
T |
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| Q |
219 |
ttttctattttagttgtattcccccgtgagaaattttgcctagatgttgtctatttctggtttatctacgtgcttttaagaagcaacgctagctatatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43210245 |
ttttctattttagttgtattcccccgtgagaaattttgcctagatgttgtctatttttggtttatctacgtgcttttaagaagcaacgctagctatatt |
43210147 |
T |
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