View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21009_low_15 (Length: 280)

Name: NF21009_low_15
Description: NF21009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21009_low_15
NF21009_low_15
[»] chr2 (23 HSPs)
chr2 (19-280)||(9321646-9321907)
chr2 (70-280)||(10372588-10372798)
chr2 (71-277)||(9292638-9292841)
chr2 (135-269)||(8572745-8572879)
chr2 (94-280)||(9060331-9060517)
chr2 (135-279)||(9316793-9316940)
chr2 (183-280)||(9329418-9329515)
chr2 (120-280)||(10353901-10354061)
chr2 (176-278)||(10336623-10336725)
chr2 (181-280)||(10348620-10348719)
chr2 (135-260)||(14551091-14551215)
chr2 (184-280)||(12018147-12018243)
chr2 (180-267)||(7114891-7114978)
chr2 (183-280)||(9357935-9358032)
chr2 (176-280)||(9283407-9283511)
chr2 (176-268)||(12005410-12005502)
chr2 (184-268)||(12011838-12011922)
chr2 (176-278)||(9275335-9275437)
chr2 (184-263)||(9365415-9365494)
chr2 (184-280)||(7612716-7612812)
chr2 (43-95)||(9329287-9329339)
chr2 (188-268)||(11986770-11986850)
chr2 (231-280)||(8578758-8578807)
[»] chr3 (2 HSPs)
chr3 (120-278)||(37463278-37463436)
chr3 (219-280)||(39428733-39428794)
[»] scaffold0667 (1 HSPs)
scaffold0667 (166-280)||(5261-5375)
[»] chr4 (2 HSPs)
chr4 (120-278)||(26575635-26575793)
chr4 (176-260)||(561982-562066)
[»] chr8 (1 HSPs)
chr8 (162-278)||(41965957-41966073)
[»] chr1 (2 HSPs)
chr1 (151-278)||(29452586-29452713)
chr1 (135-278)||(29467060-29467203)
[»] chr5 (1 HSPs)
chr5 (185-260)||(36225571-36225646)


Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 9321646 - 9321907
Alignment:
Q  19 ataagagccatggttctggttctattacgtgtgacaggagtgatgttggtggtgaaaggatggttgagtggaatcatcatggatttagagaaatcatcat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321646 ataagagccatggttctggttctattacgtgtgacaggagtgattttggtggtgaaaggatggttgagtggaatcatcatggatttagagaaatcatcat 9321745  T
Q  119 gatcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9321746 gatcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgagaatc 9321845  T
Q  219 gattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagc 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321846 gattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagc 9321907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 70 - 280
Target Start/End: Original strand, 10372588 - 10372798
Alignment:
Q  70 gtgaaaggatggttgagtggaatcatcatggatttagagaaatcatcatgatc---atcgatttggagttggtagagatcgaatttgtgttgaatgatta 166  Q
    |||||||||||||||||||||||| ||   ||||||||||||||||||| |||   ||||||||||||||||||||||||||||||| |||||| |||||    
T  10372588 gtgaaaggatggttgagtggaatcctc---gatttagagaaatcatcatcatcgtcatcgatttggagttggtagagatcgaatttgcgttgaaggatta 10372684  T
Q  167 aggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtga 266  Q
    |||||||| |||||||||||| ||| |||||||||||||| | ||| ||||||||||  ||||||| |||||| ||||||||||||||| ||||||||||    
T  10372685 aggatcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaatgatttaaatgattttgaagttgatcggaatcggagaagtga 10372784  T
Q  267 ttttaccggtaagc 280  Q
    ||||||||||||||    
T  10372785 ttttaccggtaagc 10372798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 71 - 277
Target Start/End: Original strand, 9292638 - 9292841
Alignment:
Q  71 tgaaaggatggttgagtggaatcatcatggatttagagaaatcatcatgatcatcgatttggagttggtagagatcgaatttgtgttgaatgattaagga 170  Q
    |||||||||||||||||||||| |||   || || ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  9292638 tgaaaggatggttgagtggaataatc---gacttggagaaatcatcatcatcatcgatttggagttggtagagatcgaatttgtgtcgaaggattaagga 9292734  T
Q  171 tcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgatttt 270  Q
    |||  |||||||||||||||| ||||||||  |||||  ||| |||||||||| ||||||||||||||| ||| |||||||||||  |||||||||||||    
T  9292735 tcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgatttt 9292834  T
Q  271 accggta 277  Q
    || ||||    
T  9292835 actggta 9292841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 135 - 269
Target Start/End: Complemental strand, 8572879 - 8572745
Alignment:
Q  135 ttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagt 234  Q
    |||||||| |||| | ||| || ||||||||||||| ||| |||||||||||||||| ||||||||| |||||| ||| ||||||||||| |||||||||    
T  8572879 ttggtagatatcgtagttgcgtcgaatgattaaggaacgattgagggaatttttgaggtgaaggttggtgaagttgtgggaatcgattatagatttaagt 8572780  T
Q  235 gatttagaagttgatcggaattggagaagtgattt 269  Q
    ||||| ||||||||||||||| |||||||||||||    
T  8572779 gattttgaagttgatcggaatcggagaagtgattt 8572745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 280
Target Start/End: Complemental strand, 9060517 - 9060331
Alignment:
Q  94 atcatggatttagagaaatcatcatgatcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatt---tttga 190  Q
    ||||| |||||||||||||||||||   |||||| ||||||||||||||||||| |||||||| ||| |||||   ||||| |||||| |||   |||||    
T  9060517 atcattgatttagagaaatcatcat---catcgacttggagttggtagagatcggatttgtgtcgaaggattataaatcgattgaggggattatttttga 9060421  T
Q  191 gatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagc 280  Q
    | | ||||||  |||||| ||| |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||  ||||||||||    
T  9060420 ggtaaaggttagtgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatcggaatcggagaagtgattgaaccggtaagc 9060331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 135 - 279
Target Start/End: Original strand, 9316793 - 9316940
Alignment:
Q  135 ttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatt---tttgagatgaaggttgatgaagtggtgcgaatcgattatggattta 231  Q
    ||||||||| ||| ||||||  |||| ||||||||||||| ||||||||||   |||||| |||||||||||||||| ||| ||||| ||||  ||||||    
T  9316793 ttggtagagttcggatttgtaatgaaggattaaggatcgattgagggaattatttttgaggtgaaggttgatgaagttgtgagaatctattaaagattta 9316892  T
Q  232 agtgatttagaagttgatcggaattggagaagtgattttaccggtaag 279  Q
    |||||||| ||||||||||||||| |||||||||||||||| ||||||    
T  9316893 agtgattttgaagttgatcggaatcggagaagtgattttactggtaag 9316940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 183 - 280
Target Start/End: Original strand, 9329418 - 9329515
Alignment:
Q  183 atttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagc 280  Q
    ||||||||| ||||||||  |||||| ||| |||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||    
T  9329418 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagc 9329515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 280
Target Start/End: Original strand, 10353901 - 10354061
Alignment:
Q  120 atcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcg 219  Q
    |||||||||||  | |||||||| ||||||||||  | |||  ||||||||| || || |||||||| |||| |||||||||||||| | ||  ||||||    
T  10353901 atcatcgattttaatttggtagatatcgaatttgaatcgaagaattaaggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatcg 10354000  T
Q  220 attatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagc 280  Q
    |||| |||||||| |||||| |||||||||||||||  |||||||||| ||||||||||||    
T  10354001 attagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagc 10354061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 10336623 - 10336725
Alignment:
Q  176 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccgg 275  Q
    ||||||||||||  || |||||||||||||| | ||| |||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||||    
T  10336623 tgagggaattttgaaggtgaaggttgatgaatttgtgagaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccgg 10336722  T
Q  276 taa 278  Q
    |||    
T  10336723 taa 10336725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 181 - 280
Target Start/End: Original strand, 10348620 - 10348719
Alignment:
Q  181 gaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagc 280  Q
    |||||||| || |||||||||||||| | | | |||||||||| ||||||||||||||| || |||||||||||| ||||||||||||||||||||||||    
T  10348620 gaattttttaggtgaaggttgatgaatttgagggaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagc 10348719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 260
Target Start/End: Original strand, 14551091 - 14551215
Alignment:
Q  135 ttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagt 234  Q
    ||||||||||| | | |||||| ||| ||||||||| | | ||||||||||||| || ||||| |||||||||| ||| |||||||||| ||||| ||||    
T  14551091 ttggtagagattggacttgtgtcgaaggattaaggaacaattgagggaattttt-aggtgaagtttgatgaagttgtgggaatcgattagggattgaagt 14551189  T
Q  235 gatttagaagttgatcggaattggag 260  Q
    ||||| ||||||||||||||||||||    
T  14551190 gattttgaagttgatcggaattggag 14551215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 184 - 280
Target Start/End: Complemental strand, 12018243 - 12018147
Alignment:
Q  184 tttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagc 280  Q
    |||||||| ||||| ||| |||||| ||| |||||||||||||||||||||||||| |||||||| |||||| | |||||||||||||| |||||||    
T  12018243 tttttgagttgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcgaagaagtgattttactggtaagc 12018147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 7114978 - 7114891
Alignment:
Q  180 ggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgat 267  Q
    ||||||||| ||||||||||||||||| | ||| |||||||||| ||||||||||||||| ||||||||||||||| | |||||||||    
T  7114978 ggaatttttaagatgaaggttgatgaatttgtgggaatcgattaaggatttaagtgattttgaagttgatcggaatcgaagaagtgat 7114891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 183 - 280
Target Start/End: Original strand, 9357935 - 9358032
Alignment:
Q  183 atttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagc 280  Q
    ||||||||| |||||||| ||||||| ||| |||||||||| ||||||||||||||| ||||||||||  ||  |||||||||||||||| |||||||    
T  9357935 atttttgaggtgaaggtttatgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagc 9358032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 280
Target Start/End: Complemental strand, 9283511 - 9283407
Alignment:
Q  176 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccgg 275  Q
    |||||||| ||||||| |||||||||||||| | ||| ||||| |||| ||||  ||||||||||||||||||||||||| |||| |||||||| || ||    
T  9283511 tgagggaacttttgaggtgaaggttgatgaatttgtgagaatctattagggatcgaagtgatttagaagttgatcggaatcggagtagtgatttaactgg 9283412  T
Q  276 taagc 280  Q
    |||||    
T  9283411 taagc 9283407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 268
Target Start/End: Complemental strand, 12005502 - 12005410
Alignment:
Q  176 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgatt 268  Q
    |||| |||||||| |||||||||||| |||||| ||| |||||||||||||||||||| ||||  |||||||| |||||| ||||||||||||    
T  12005502 tgagagaattttttagatgaaggttggtgaagttgtgagaatcgattatggatttaagcgattctgaagttgagcggaatcggagaagtgatt 12005410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 268
Target Start/End: Complemental strand, 12011922 - 12011838
Alignment:
Q  184 tttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgatt 268  Q
    |||||||| ||||| ||| |||||| ||| |||||||||||||||||||||||||| |||||||| |||||| ||||||||||||    
T  12011922 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcggagaagtgatt 12011838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 9275335 - 9275437
Alignment:
Q  176 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccgg 275  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| || |  |||||||||||||| ||  |||||||||||  ||||||||||| ||| ||    
T  9275335 tgagggaatttttgagatgaaggttgatgaagttgtgggaatcaatcaacgatttaagtgattttgagattgatcggaatcagagaagtgattgtactgg 9275434  T
Q  276 taa 278  Q
    |||    
T  9275435 taa 9275437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 263
Target Start/End: Original strand, 9365415 - 9365494
Alignment:
Q  184 tttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaag 263  Q
    ||||||||||| |||||| |||||  ||| |||||||||||||||||||||||||| || |||||||||||| |||||||    
T  9365415 tttttgagatggaggttggtgaaggtgtgagaatcgattatggatttaagtgattttgaggttgatcggaatcggagaag 9365494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 280
Target Start/End: Original strand, 7612716 - 7612812
Alignment:
Q  184 tttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagc 280  Q
    |||||||| ||||||||  |||||| ||| ||||| |||| ||||||||| ||||||||| ||||||||||| |||| || | || |||||||||||    
T  7612716 tttttgaggtgaaggtttgtgaagttgtgggaatcaattaaggatttaagcgatttagaaattgatcggaatcggaggagggtttgtaccggtaagc 7612812  T

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Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 9329287 - 9329339
Alignment:
Q  43 ttacgtgtgacaggagtgatgttggtggtgaaaggatggttgagtggaatcat 95  Q
    ||||| ||||||||||  ||||||||| |||||||||||||||||||||||||    
T  9329287 ttacgcgtgacaggagcaatgttggtgctgaaaggatggttgagtggaatcat 9329339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 268
Target Start/End: Complemental strand, 11986850 - 11986770
Alignment:
Q  188 tgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgatt 268  Q
    |||| ||||| ||| |||||| ||| ||||| |||||||||||||| ||||  |||||||| |||||| ||||||||||||    
T  11986850 tgaggtgaagattggtgaagttgtgagaatcaattatggatttaagcgattctgaagttgagcggaatcggagaagtgatt 11986770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 280
Target Start/End: Complemental strand, 8578807 - 8578758
Alignment:
Q  231 aagtgatttagaagttgatcggaattggagaagtgattttaccggtaagc 280  Q
    ||||||||||||| ||||||||||| ||||||| |||| |||||||||||    
T  8578807 aagtgatttagaaattgatcggaatcggagaagggattgtaccggtaagc 8578758  T

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Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 120 - 278
Target Start/End: Original strand, 37463278 - 37463436
Alignment:
Q  120 atcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcg 219  Q
    ||||||||||||||||||||||| |||| | |||| | ||||||||| |||| || |||||| |||||||||||||||||||||||||| ||| ||||||    
T  37463278 atcatcgatttggagttggtagatatcggagttgtttcgaatgattacggattgattgaggggatttttgagatgaaggttgatgaagttgtgagaatcg 37463377  T
Q  220 attatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaa 278  Q
    ||||  |||||||||||||| ||||||||||||||| |||||||||||| ||| |||||    
T  37463378 attaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaa 37463436  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 39428733 - 39428794
Alignment:
Q  219 gattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagc 280  Q
    ||||| |||||||| | |||| |||||||||||||||||||| || ||||  ||||||||||    
T  39428733 gattaaggatttaactcattttgaagttgatcggaattggaggagggattgcaccggtaagc 39428794  T

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Target: scaffold0667 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 166 - 280
Target Start/End: Original strand, 5261 - 5375
Alignment:
Q  166 aaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtg 265  Q
    ||||||| | |||||||||||||| | |||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  5261 aaggatctattgagggaatttttgcggtgaaggttgatgaagttgtgagaatcgattatggatttaagtgattttgaagttgatcggaatcggagaagtg 5360  T
Q  266 attttaccggtaagc 280  Q
    |||||||||||||||    
T  5361 attttaccggtaagc 5375  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 120 - 278
Target Start/End: Original strand, 26575635 - 26575793
Alignment:
Q  120 atcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcg 219  Q
    ||||| |||||  |||||||||| ||||||||||  | ||| ||||||||||||| || |||||||| |||| |||||||||||||| | ||  ||||||    
T  26575635 atcattgatttcaagttggtagatatcgaatttgaatcgaaggattaaggatcgattgggggaatttctgaggtgaaggttgatgaatttgtaggaatcg 26575734  T
Q  220 attatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaa 278  Q
    |||| | ||||||||||||| ||||||||||||||| ||||||||||| ||||||||||    
T  26575735 attaagaatttaagtgattttgaagttgatcggaatcggagaagtgatattaccggtaa 26575793  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 561982 - 562066
Alignment:
Q  176 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggag 260  Q
    ||||||| |||||||| ||||||||  |||||| ||| ||||||||||||||||||||  |||| ||| || |||||||| ||||    
T  561982 tgagggagtttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagccattttgaacttaatcggaatcggag 562066  T

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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 162 - 278
Target Start/End: Complemental strand, 41966073 - 41965957
Alignment:
Q  162 gattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggaga 261  Q
    ||||||||||||| ||||||| ||| |||| |||||||||||||||| ||| |||||||||| ||||  ||||||||| || |||||||||||| |||||    
T  41966073 gattaaggatcgattgagggattttctgaggtgaaggttgatgaagttgtgggaatcgattaaggatcgaagtgatttcgaggttgatcggaatcggaga 41965974  T
Q  262 agtgattttaccggtaa 278  Q
    | |||||||||||||||    
T  41965973 actgattttaccggtaa 41965957  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 151 - 278
Target Start/End: Complemental strand, 29452713 - 29452586
Alignment:
Q  151 ttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatc 250  Q
    |||||| ||| ||||||||| ||| |||||||||||| ||| ||||| |||||||||| ||| |||||||||| ||||| ||||||||| || ||||| |    
T  29452713 ttgtgtcgaaggattaaggaacgattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaac 29452614  T
Q  251 ggaattggagaagtgattttaccggtaa 278  Q
    ||||| |||| || |||| |||||||||    
T  29452613 ggaatcggaggagggattgtaccggtaa 29452586  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 135 - 278
Target Start/End: Complemental strand, 29467203 - 29467060
Alignment:
Q  135 ttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagt 234  Q
    |||||||| |||| | |||||| ||| ||||||| | ||| |||||||||||  ||| ||||| |||||||||| ||| |||||||||| ||||| ||||    
T  29467203 ttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttcggaggtgaagtttgatgaagttgtgggaatcgattagggattgaagt 29467104  T
Q  235 gatttagaagttgatcggaattggagaagtgattttaccggtaa 278  Q
    ||||| || ||||| |||||| |||| || |||| |||||||||    
T  29467103 gattttgaggttgaacggaatcggaggagggattgtaccggtaa 29467060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 36225571 - 36225646
Alignment:
Q  185 ttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggag 260  Q
    ||||||| ||||| ||  |||||| ||||||||||||||  |||||||||||||| ||||||||||||||| ||||    
T  36225571 ttttgaggtgaagattagtgaagttgtgcgaatcgattaacgatttaagtgattttgaagttgatcggaatcggag 36225646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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