View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21009_low_16 (Length: 274)
Name: NF21009_low_16
Description: NF21009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21009_low_16 |
 | |
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| [»] scaffold0496 (1 HSPs) |
| | |
|
| [»] scaffold1330 (1 HSPs) |
| | |
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| [»] scaffold0345 (1 HSPs) |
| | |
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| [»] scaffold0105 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 7457887 - 7458149
Alignment:
| Q |
11 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7457887 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatgaaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
7457986 |
T |
|
| Q |
111 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccagtgccaactggagtattggaggcaccaccatcttatggaccacc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7457987 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccaatgccaactggagtattggaggcaccaccatcttatggaccacc |
7458086 |
T |
|
| Q |
211 |
tcctttgattgcagttgtaaaaaatgtattgtataatgctgattacgcaacaaaggaagtaaa |
273 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7458087 |
tcccttgattgcagttgtaaaaaatgtattgtataatgctgattacgcaacaaaggaagtaaa |
7458149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 7411808 - 7412070
Alignment:
| Q |
11 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
110 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7411808 |
atgaataaagcaagaaaaatgtgttggggtgtatttatggatgaaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
7411907 |
T |
|
| Q |
111 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccagtgccaactggagtattggaggcaccaccatcttatggaccacc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7411908 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccaatgccaactggagtattggaggcaccaccatcttatggaccacc |
7412007 |
T |
|
| Q |
211 |
tcctttgattgcagttgtaaaaaatgtattgtataatgctgattacgcaacaaaggaagtaaa |
273 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7412008 |
tcccttgattgcagttgtaaaaaatgtattgtataatgctgattacgcaacaaaggaagtaaa |
7412070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 44919976 - 44920056
Alignment:
| Q |
44 |
tttatggatggaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtggtgaggaatttgat |
124 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||| |||||| ||| |||||||||| ||| || |||||||| || |||||| |
|
|
| T |
44919976 |
tttatggatgaaaaattttatgtccttggcggagttggagttgacaaaacaacacaactaacttgtggtgaagagtttgat |
44920056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 44920148 - 44920184
Alignment:
| Q |
207 |
cacctcctttgattgcagttgtaaaaaatgtattgta |
243 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
44920148 |
cacctcctttaattgcagttgtaaaagatgtattgta |
44920184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 2736 - 2969
Alignment:
| Q |
11 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || | |||||| |||| ||||| ||||||||||| |
|
|
| T |
2736 |
atgaataaagcaagaaaaatgtgttcaagtgtatttatggatggaaaattttacgtccttggtgggatagcagctgacaaaaaaacacaacttacatgtg |
2835 |
T |
|
| Q |
111 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccagtgccaactggagtattggaggcaccaccatcttatggaccacc |
210 |
Q |
| |
|
||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||||||| | ||||||||| | ||| ||||||| |||| ||| |||| |
|
|
| T |
2836 |
gtgaggagtttgatataaagaataaaaaatggcgtgaaatacccaacatgctcccagtacgaactggagtgtctgagacaccaccttcttttgggtcacc |
2935 |
T |
|
| Q |
211 |
tcctttgattgcagttgtaaaaaatgtattgtat |
244 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |
|
|
| T |
2936 |
tcccttgattgcagttgtaaaaaatgtattgtat |
2969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1330 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold1330
Description:
Target: scaffold1330; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 1538 - 1771
Alignment:
| Q |
11 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || | |||||| |||| ||||| |||||||||| |
|
|
| T |
1538 |
atgaataaagcaagaaaaatgtgttcaagtgtattcatggatggaaaattttatgtccttggtgggatagcagctgacaaaaaaacacagcttacatgtg |
1637 |
T |
|
| Q |
111 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccagtgccaactggagtattggaggcaccaccatcttatggaccacc |
210 |
Q |
| |
|
| ||||| |||||||| |||| |||| |||||||||||||||| ||||||||||| || | ||||||||| || ||| ||||||| |||| ||| |||| |
|
|
| T |
1638 |
gggaggagtttgatatgaagacaaaaaaatggcgtgaaatacctaacatgttccccgtacgaactggagtgtttgagacaccaccttcttttgggtcacc |
1737 |
T |
|
| Q |
211 |
tcctttgattgcagttgtaaaaaatgtattgtat |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
1738 |
tcctttgattgcagttgtaaaaaatgtattgtat |
1771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 3840 - 3607
Alignment:
| Q |
11 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || | |||||| |||| ||||| |||||||||| |
|
|
| T |
3840 |
atgaataaagcaagaaaaatgtgttcaagtgtattcatggatggaaaattttatgtccttggtgggatagcagctgacaaaaaaacacagcttacatgtg |
3741 |
T |
|
| Q |
111 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccagtgccaactggagtattggaggcaccaccatcttatggaccacc |
210 |
Q |
| |
|
| ||||| |||||||| |||| |||| |||||||||||||||| ||||||||||| || | ||||||||| || ||| ||||||| |||| ||| |||| |
|
|
| T |
3740 |
gggaggagtttgatatgaagacaaaaaaatggcgtgaaatacctaacatgttccccgtacgaactggagtgtttgagacaccaccttcttttgggtcacc |
3641 |
T |
|
| Q |
211 |
tcctttgattgcagttgtaaaaaatgtattgtat |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
3640 |
tcctttgattgcagttgtaaaaaatgtattgtat |
3607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 3953 - 3720
Alignment:
| Q |
11 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || | |||||| |||| ||||| |||||||||| |
|
|
| T |
3953 |
atgaataaagcaagaaaaatgtgttcaagtgtattcatggatggaaaattttatgtccttggtgggatagcagctgacaaaaaaacacagcttacatgtg |
3854 |
T |
|
| Q |
111 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccagtgccaactggagtattggaggcaccaccatcttatggaccacc |
210 |
Q |
| |
|
| ||||| |||||||| |||| |||| |||||||||||||||| ||||||||||| || | ||||||||| || ||| ||||||| |||| ||| |||| |
|
|
| T |
3853 |
gggaggagtttgatatgaagacaaaaaaatggcgtgaaatacctaacatgttccccgtacgaactggagtgtttgagacaccaccttcttttgggtcacc |
3754 |
T |
|
| Q |
211 |
tcctttgattgcagttgtaaaaaatgtattgtat |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
3753 |
tcctttgattgcagttgtaaaaaatgtattgtat |
3720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 10035 - 9802
Alignment:
| Q |
11 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || | |||||| |||| ||||| |||||||||| |
|
|
| T |
10035 |
atgaataaagcaagaaaaatgtgttcaagtgtattcatggatggaaaattttatgtccttggtgggatagcagctgacaaaaaaacacagcttacatgtg |
9936 |
T |
|
| Q |
111 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccagtgccaactggagtattggaggcaccaccatcttatggaccacc |
210 |
Q |
| |
|
| ||||| |||||||| |||| |||| |||||||||||||||| ||||||||||| || | ||||||||| || ||| ||||||| |||| ||| |||| |
|
|
| T |
9935 |
gggaggagtttgatatgaagacaaaaaaatggcgtgaaatacctaacatgttccccgtacgaactggagtgtttgagacaccaccttcttttgggtcacc |
9836 |
T |
|
| Q |
211 |
tcctttgattgcagttgtaaaaaatgtattgtat |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
9835 |
tcctttgattgcagttgtaaaaaatgtattgtat |
9802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 48739 - 48972
Alignment:
| Q |
11 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || | |||||| |||| ||||| |||||||||| |
|
|
| T |
48739 |
atgaataaagcaagaaaaatgtgttcaagtgtattcatggatggaaaattttatgtccttggtgggatagcagctgaaaaaaaaacacagcttacatgtg |
48838 |
T |
|
| Q |
111 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccagtgccaactggagtattggaggcaccaccatcttatggaccacc |
210 |
Q |
| |
|
| ||||| |||||||| |||| |||| |||||||||||||||| ||||||||||| || | ||||||||| || ||| ||||||| |||| ||| |||| |
|
|
| T |
48839 |
gggaggagtttgatatgaagacaaaaaaatggcgtgaaatacctaacatgttccccgtacgaactggagtgtttgagacaccaccttcttttgggtcacc |
48938 |
T |
|
| Q |
211 |
tcctttgattgcagttgtaaaaaatgtattgtat |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
48939 |
tcctttgattgcagttgtaaaaaatgtattgtat |
48972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 35139 - 35372
Alignment:
| Q |
11 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || | |||||| |||| ||||| |||||||||| |
|
|
| T |
35139 |
atgaataaagcaagaaaaatgtgttcaagtgtattcatggatggaaaattttatgtccttggtgggatagcagctgacaaaaaaacacagcttacatgtg |
35238 |
T |
|
| Q |
111 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccagtgccaactggagtattggaggcaccaccatcttatggaccacc |
210 |
Q |
| |
|
| ||||| |||||||| |||| |||| ||||| |||||||||| ||||||||||| || | ||||||||| || ||| ||||||| |||| ||| |||| |
|
|
| T |
35239 |
gggaggagtttgatatgaagacaaaaaaatggtgtgaaatacctaacatgttccccgtacgaactggagtgtttgagacaccaccttcttttgggtcacc |
35338 |
T |
|
| Q |
211 |
tcctttgattgcagttgtaaaaaatgtattgtat |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
35339 |
tcctttgattgcagttgtaaaaaatgtattgtat |
35372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 17356620 - 17356675
Alignment:
| Q |
11 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgt |
66 |
Q |
| |
|
||||||||| | || || |||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
17356620 |
atgaataaaccgaggaagatgtgttctggtgtattcatggatggaaaattttatgt |
17356675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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