View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21009_low_21 (Length: 236)

Name: NF21009_low_21
Description: NF21009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21009_low_21
NF21009_low_21
[»] chr4 (1 HSPs)
chr4 (1-201)||(15727749-15727947)
[»] chr5 (2 HSPs)
chr5 (1-99)||(35026273-35026371)
chr5 (172-222)||(35026384-35026434)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 15727749 - 15727947
Alignment:
Q  1 aatactgcttctaccttcactaaggtctttgaggtgcatgctagtgaaagcattggcttcatccaaaatttgttctccttcataagattgaaacgttgcc 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||     
T  15727749 aatactgcttctaccttcactaaggtctttgaggtgaatgctagtgaaagcattggcttcatccaaaatttgttctccttcataagatagaaatgatgca 15727848  T
Q  101 tcgtagagacttaacattcctttgatatcttggacaagacatgccttaaaatctccattgtggtccttaaacttctcaaaaatatctgtatgtacgaaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||    
T  15727849 tcgtagagacttaacattcctttgatatcttggacaagacatgccttaaaatttccattgtggtccttaaacttctcaaaaatatc--tatgtacgaaaa 15727946  T

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Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 35026273 - 35026371
Alignment:
Q  1 aatactgcttctaccttcactaaggtctttgaggtgcatgctagtgaaagcattggcttcatccaaaatttgttctccttcataagattgaaacgttgc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35026273 aatactgcttctaccttcactaaggtctttgaggtgcatgctagtgaaagcattggcttcatccaaaatttgttctccttcataagatagaaacgttgc 35026371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 35026384 - 35026434
Alignment:
Q  172 cttctcaaaaatatctgtatgtacgaaaaatgaaatttaaatatcaaattt 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35026384 cttctcaaaaatatctgtatgtacgaaaaatgaaatttaaatatcaaattt 35026434  T

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